A Mentee’s Baby Registry: Supporting New Academic Parents in 2020

par Fertig, Elana J.
Publié dans Cell Syst (2020)

Quantifying the Dynamics of Coupled Networks of Switches and Oscillators

par Francis, Matthew R., Fertig, Elana J.
Publié 2012

Matrix Factorization for Transcriptional Regulatory Network Inference

par Ochs, Michael F., Fertig, Elana J.
Publié 2012

Learning Dysregulated Pathways in Cancers from Differential Variability Analysis

par Afsari, Bahman, Geman, Donald, Fertig, Elana J
Publié dans Cancer Inform (2014)

Dynamics in hybrid complex systems of switches and oscillators

par Taylor, Dane, Fertig, Elana J., Restrepo, Juan G.
Publié 2013

CoGAPS 3: Bayesian non-negative matrix factorization for single-cell analysis with asynchronous updates and sparse data structures

par Sherman, Thomas D., Gao, Tiger, Fertig, Elana J.
Publié dans BMC Bioinformatics (2020)

Identifying Context-Specific Transcription Factor Targets from Prior Knowledge and Gene Expression Data

par Fertig, Elana J, Favorov, Alexander V, Ochs, Michael F
Publié 2013

switchBox: an R package for k–Top Scoring Pairs classifier development

par Afsari, Bahman, Fertig, Elana J., Geman, Donald, Marchionni, Luigi
Publié dans Bioinformatics (2015)

Analysis of gene expression of secreted factors associated with breast cancer metastases in breast cancer subtypes

par Fertig, Elana J., Lee, Esak, Pandey, Niranjan B., Popel, Aleksander S.
Publié dans Sci Rep (2015)

Hybrid Modeling of Cell Signaling and Transcriptional Reprogramming and Its Application in C. elegans Development

par Fertig, Elana J., Danilova, Ludmila V., Favorov, Alexander V., Ochs, Michael F.
Publié 2011

CoGAPS: an R/C++ package to identify patterns and biological process activity in transcriptomic data

par Fertig, Elana J., Ding, Jie, Favorov, Alexander V., Parmigiani, Giovanni, Ochs, Michael F.
Publié 2010

Breast cancer cells condition lymphatic endothelial cells within pre-metastatic niches to promote metastasis

par Lee, Esak, Fertig, Elana J., Jin, Kideok, Sukumar, Saraswati, Pandey, Niranjan B., Popel, Aleksander S.
Publié dans Nat Commun (2014)

A Software Application for Mining and Presenting Relevant Cancer Clinical Trials per Cancer Mutation

par Gandy, Lisa M, Gumm, Jordan, Blackford, Amanda L, Fertig, Elana J, Diaz, Luis A
Publié dans Cancer Inform (2017)

projectR: an R/Bioconductor package for transfer learning via PCA, NMF, correlation and clustering

par Sharma, Gaurav, Colantuoni, Carlo, Goff, Loyal A, Fertig, Elana J, Stein-O’Brien, Genevieve
Publié dans Bioinformatics (2020)

Matrix factorization and transfer learning uncover regulatory biology across multiple single-cell ATAC-seq data sets

par Erbe, Rossin, Kessler, Michael D, Favorov, Alexander V, Easwaran, Hariharan, Gaykalova, Daria A, Fertig, Elana J
Publié dans Nucleic Acids Res (2020)

StereoGene: rapid estimation of genome-wide correlation of continuous or interval feature data

par Stavrovskaya, Elena D, Niranjan, Tejasvi, Fertig, Elana J, Wheelan, Sarah J, Favorov, Alexander V, Mironov, Andrey A
Publié dans Bioinformatics (2017)

Molecular Portrait of Hypoxia in Breast Cancer: A Prognostic Signature and Novel HIF-regulated Genes

par Ye, I Chae, Fertig, Elana J., DiGiacomo, Josh W., Considine, Michael, Godet, Inês, Gilkes, Daniele M.
Publié dans Mol Cancer Res (2018)

Preserving biological heterogeneity with a permuted surrogate variable analysis for genomics batch correction

par Parker, Hilary S., Leek, Jeffrey T., Favorov, Alexander V., Considine, Michael, Xia, Xiaoxin, Chavan, Sameer, Chung, Christine H., Fertig, Elana J.
Publié 2014

An unbiased in vivo functional genomics screening approach in mice identifies novel tumor cell-based regulators of immune rejection

par Shuptrine, Casey W., Ajina, Reham, Fertig, Elana J., Jablonski, Sandra A., Kim Lyerly, H., Hartman, Zachary C., Weiner, Louis M.
Publié dans Cancer Immunol Immunother (2017)

Toward Signaling-Driven Biomarkers Immune to Normal Tissue Contamination

par Stansfield, John C., Rusay, Matthew, Shan, Roger, Kelton, Conor, Gaykalova, Daria A., Fertig, Elana J., Califano, Joseph A., Ochs, Michael F.
Publié dans Cancer Inform (2016)