A Mentee’s Baby Registry: Supporting New Academic Parents in 2020

Por Fertig, Elana J.
Publicado no Cell Syst (2020)

Quantifying the Dynamics of Coupled Networks of Switches and Oscillators

Por Francis, Matthew R., Fertig, Elana J.
Publicado em 2012

Matrix Factorization for Transcriptional Regulatory Network Inference

Por Ochs, Michael F., Fertig, Elana J.
Publicado em 2012

Learning Dysregulated Pathways in Cancers from Differential Variability Analysis

Por Afsari, Bahman, Geman, Donald, Fertig, Elana J
Publicado no Cancer Inform (2014)

Dynamics in hybrid complex systems of switches and oscillators

Por Taylor, Dane, Fertig, Elana J., Restrepo, Juan G.
Publicado em 2013

CoGAPS 3: Bayesian non-negative matrix factorization for single-cell analysis with asynchronous updates and sparse data structures

Por Sherman, Thomas D., Gao, Tiger, Fertig, Elana J.
Publicado no BMC Bioinformatics (2020)

Identifying Context-Specific Transcription Factor Targets from Prior Knowledge and Gene Expression Data

Por Fertig, Elana J, Favorov, Alexander V, Ochs, Michael F
Publicado em 2013

switchBox: an R package for k–Top Scoring Pairs classifier development

Por Afsari, Bahman, Fertig, Elana J., Geman, Donald, Marchionni, Luigi
Publicado no Bioinformatics (2015)

Analysis of gene expression of secreted factors associated with breast cancer metastases in breast cancer subtypes

Por Fertig, Elana J., Lee, Esak, Pandey, Niranjan B., Popel, Aleksander S.
Publicado no Sci Rep (2015)

Hybrid Modeling of Cell Signaling and Transcriptional Reprogramming and Its Application in C. elegans Development

Por Fertig, Elana J., Danilova, Ludmila V., Favorov, Alexander V., Ochs, Michael F.
Publicado em 2011

CoGAPS: an R/C++ package to identify patterns and biological process activity in transcriptomic data

Por Fertig, Elana J., Ding, Jie, Favorov, Alexander V., Parmigiani, Giovanni, Ochs, Michael F.
Publicado em 2010

Breast cancer cells condition lymphatic endothelial cells within pre-metastatic niches to promote metastasis

Por Lee, Esak, Fertig, Elana J., Jin, Kideok, Sukumar, Saraswati, Pandey, Niranjan B., Popel, Aleksander S.
Publicado no Nat Commun (2014)

A Software Application for Mining and Presenting Relevant Cancer Clinical Trials per Cancer Mutation

Por Gandy, Lisa M, Gumm, Jordan, Blackford, Amanda L, Fertig, Elana J, Diaz, Luis A
Publicado no Cancer Inform (2017)

projectR: an R/Bioconductor package for transfer learning via PCA, NMF, correlation and clustering

Por Sharma, Gaurav, Colantuoni, Carlo, Goff, Loyal A, Fertig, Elana J, Stein-O’Brien, Genevieve
Publicado no Bioinformatics (2020)

Matrix factorization and transfer learning uncover regulatory biology across multiple single-cell ATAC-seq data sets

Por Erbe, Rossin, Kessler, Michael D, Favorov, Alexander V, Easwaran, Hariharan, Gaykalova, Daria A, Fertig, Elana J
Publicado no Nucleic Acids Res (2020)

StereoGene: rapid estimation of genome-wide correlation of continuous or interval feature data

Por Stavrovskaya, Elena D, Niranjan, Tejasvi, Fertig, Elana J, Wheelan, Sarah J, Favorov, Alexander V, Mironov, Andrey A
Publicado no Bioinformatics (2017)

Molecular Portrait of Hypoxia in Breast Cancer: A Prognostic Signature and Novel HIF-regulated Genes

Por Ye, I Chae, Fertig, Elana J., DiGiacomo, Josh W., Considine, Michael, Godet, Inês, Gilkes, Daniele M.
Publicado no Mol Cancer Res (2018)

Preserving biological heterogeneity with a permuted surrogate variable analysis for genomics batch correction

Por Parker, Hilary S., Leek, Jeffrey T., Favorov, Alexander V., Considine, Michael, Xia, Xiaoxin, Chavan, Sameer, Chung, Christine H., Fertig, Elana J.
Publicado em 2014

An unbiased in vivo functional genomics screening approach in mice identifies novel tumor cell-based regulators of immune rejection

Por Shuptrine, Casey W., Ajina, Reham, Fertig, Elana J., Jablonski, Sandra A., Kim Lyerly, H., Hartman, Zachary C., Weiner, Louis M.
Publicado no Cancer Immunol Immunother (2017)

Toward Signaling-Driven Biomarkers Immune to Normal Tissue Contamination

Por Stansfield, John C., Rusay, Matthew, Shan, Roger, Kelton, Conor, Gaykalova, Daria A., Fertig, Elana J., Califano, Joseph A., Ochs, Michael F.
Publicado no Cancer Inform (2016)