Knowledge-based data analysis comes of age

по Ochs, Michael F.
Опубликовано 2010

Information Systems for Cancer Research

по Ochs, Michael F., Casagrande, John T.
Опубликовано 2008

Updating annotations with the distributed annotation system and the automated sequence annotation pipeline

по Speier, William, Ochs, Michael F.
Опубликовано 2012

Implications of Systemic Dysfunction for the Etiology of Malignancy

по Knox, Sarah S., Ochs, Michael F.
Опубликовано 2013

Matrix Factorization for Recovery of Biological Processes from Microarray Data

по Kossenkov, Andrew V., Ochs, Michael F.
Опубликовано 2009

Matrix Factorization Methods Applied in Microarray Data Analysis

по Kossenkov, Andrew V., Ochs, Michael F.
Опубликовано 2010

Matrix Factorization for Transcriptional Regulatory Network Inference

по Ochs, Michael F., Fertig, Elana J.
Опубликовано 2012

LS-NMF: A modified non-negative matrix factorization algorithm utilizing uncertainty estimates

по Wang, Guoli, Kossenkov, Andrew V, Ochs, Michael F
Опубликовано 2006

Proteomics LIMS: A caBIG™ Project, Year 1

по Tchuvatkina, Olga, Shimoni, Liat, Ochs, Michael F., Moloshok, Thomas
Опубликовано 2006

A Comprehensive Statistical Model for Cell Signaling and Protein Activity Inference

по Yörük, Erdem, Ochs, Michael F., Geman, Donald, Younes, Laurent
Опубликовано 2011

Identifying Context-Specific Transcription Factor Targets from Prior Knowledge and Gene Expression Data

по Fertig, Elana J, Favorov, Alexander V, Ochs, Michael F
Опубликовано 2013

Determination of strongly overlapping signaling activity from microarray data

по Bidaut, Ghislain, Suhre, Karsten, Claverie, Jean-Michel, Ochs, Michael F
Опубликовано 2006

OnionTree XML: A Format to Exchange Gene-Related Probabilities

по Favorov, Alexander, Lvovs, Dmitrijs, Speier, William, Parmigiani, Giovanni, Ochs, Michael F.
Опубликовано в: J Biomol Struct Dyn (2011)

Evaluating optimal therapy robustness by virtual expansion of a sample population, with a case study in cancer immunotherapy

по Barish, Syndi, Ochs, Michael F., Sontag, Eduardo D., Gevertz, Jana L.
Опубликовано в: Proc Natl Acad Sci U S A (2017)

Hybrid Modeling of Cell Signaling and Transcriptional Reprogramming and Its Application in C. elegans Development

по Fertig, Elana J., Danilova, Ludmila V., Favorov, Alexander V., Ochs, Michael F.
Опубликовано 2011

CoGAPS: an R/C++ package to identify patterns and biological process activity in transcriptomic data

по Fertig, Elana J., Ding, Jie, Favorov, Alexander V., Parmigiani, Giovanni, Ochs, Michael F.
Опубликовано 2010

ZNF-Mediated Resistance to Imatinib Mesylate in Gastrointestinal Stromal Tumor

по Rink, Lori, Ochs, Michael F., Zhou, Yan, von Mehren, Margaret, Godwin, Andrew K.
Опубликовано 2013

Correcting Transcription Factor Gene Sets for Copy Number and Promoter Methylation Variations

по Rathi, Komal S., Gaykalova, Daria A., Hennesey, Patrick, Califano, Joseph A., Ochs, Michael F.
Опубликовано 2014

Outlier Analysis and Top Scoring Pair for Integrated Data Analysis and Biomarker Discovery

по Ochs, Michael F., Farrar, Jason E., Considine, Michael, Wei, Yingying, Meshinchi, Soheil, Arceci, Robert J.
Опубликовано 2014

Detection of Treatment-Induced Changes in Signaling Pathways in Gastrointestinal Stromal Tumors using Transcriptomic Data

по Ochs, Michael F., Rink, Lori, Tarn, Chi, Mburu, Sarah, Taguchi, Takahiro, Eisenberg, Burton, Godwin, Andrew K.
Опубликовано 2009