Knowledge-based data analysis comes of age

Por Ochs, Michael F.
Publicado em 2010

Information Systems for Cancer Research

Por Ochs, Michael F., Casagrande, John T.
Publicado em 2008

Updating annotations with the distributed annotation system and the automated sequence annotation pipeline

Por Speier, William, Ochs, Michael F.
Publicado em 2012

Implications of Systemic Dysfunction for the Etiology of Malignancy

Por Knox, Sarah S., Ochs, Michael F.
Publicado em 2013

Matrix Factorization for Recovery of Biological Processes from Microarray Data

Por Kossenkov, Andrew V., Ochs, Michael F.
Publicado em 2009

Matrix Factorization Methods Applied in Microarray Data Analysis

Por Kossenkov, Andrew V., Ochs, Michael F.
Publicado em 2010

Matrix Factorization for Transcriptional Regulatory Network Inference

Por Ochs, Michael F., Fertig, Elana J.
Publicado em 2012

LS-NMF: A modified non-negative matrix factorization algorithm utilizing uncertainty estimates

Por Wang, Guoli, Kossenkov, Andrew V, Ochs, Michael F
Publicado em 2006

Proteomics LIMS: A caBIG™ Project, Year 1

Por Tchuvatkina, Olga, Shimoni, Liat, Ochs, Michael F., Moloshok, Thomas
Publicado em 2006

A Comprehensive Statistical Model for Cell Signaling and Protein Activity Inference

Por Yörük, Erdem, Ochs, Michael F., Geman, Donald, Younes, Laurent
Publicado em 2011

Identifying Context-Specific Transcription Factor Targets from Prior Knowledge and Gene Expression Data

Por Fertig, Elana J, Favorov, Alexander V, Ochs, Michael F
Publicado em 2013

Determination of strongly overlapping signaling activity from microarray data

Por Bidaut, Ghislain, Suhre, Karsten, Claverie, Jean-Michel, Ochs, Michael F
Publicado em 2006

OnionTree XML: A Format to Exchange Gene-Related Probabilities

Por Favorov, Alexander, Lvovs, Dmitrijs, Speier, William, Parmigiani, Giovanni, Ochs, Michael F.
Publicado no J Biomol Struct Dyn (2011)

Hybrid Modeling of Cell Signaling and Transcriptional Reprogramming and Its Application in C. elegans Development

Por Fertig, Elana J., Danilova, Ludmila V., Favorov, Alexander V., Ochs, Michael F.
Publicado em 2011

CoGAPS: an R/C++ package to identify patterns and biological process activity in transcriptomic data

Por Fertig, Elana J., Ding, Jie, Favorov, Alexander V., Parmigiani, Giovanni, Ochs, Michael F.
Publicado em 2010

ZNF-Mediated Resistance to Imatinib Mesylate in Gastrointestinal Stromal Tumor

Por Rink, Lori, Ochs, Michael F., Zhou, Yan, von Mehren, Margaret, Godwin, Andrew K.
Publicado em 2013

Correcting Transcription Factor Gene Sets for Copy Number and Promoter Methylation Variations

Por Rathi, Komal S., Gaykalova, Daria A., Hennesey, Patrick, Califano, Joseph A., Ochs, Michael F.
Publicado em 2014

Outlier Analysis and Top Scoring Pair for Integrated Data Analysis and Biomarker Discovery

Por Ochs, Michael F., Farrar, Jason E., Considine, Michael, Wei, Yingying, Meshinchi, Soheil, Arceci, Robert J.
Publicado em 2014

Detection of Treatment-Induced Changes in Signaling Pathways in Gastrointestinal Stromal Tumors using Transcriptomic Data

Por Ochs, Michael F., Rink, Lori, Tarn, Chi, Mburu, Sarah, Taguchi, Takahiro, Eisenberg, Burton, Godwin, Andrew K.
Publicado em 2009

A Markov Chain Monte Carlo Technique for Identification of Combinations of Allelic Variants Underlying Complex Diseases in Humans

Por Favorov, Alexander V., Andreewski, Timophey V., Sudomoina, Marina A., Favorova, Olga O., Parmigiani, Giovanni, Ochs, Michael F.
Publicado em 2005