Probabilistic reconstruction of the tumor progression process in gene regulatory networks in the presence of uncertainty

по Esfahani, Mohammad Shahrokh, Yoon, Byung-Jun, Dougherty, Edward R
Опубликовано 2011

Incorporating biological prior knowledge for Bayesian learning via maximal knowledge-driven information priors

по Boluki, Shahin, Esfahani, Mohammad Shahrokh, Qian, Xiaoning, Dougherty, Edward R
Опубликовано в: BMC Bioinformatics (2017)

Classifier Design Given an Uncertainty Class of Feature Distributions via Regularized Maximum Likelihood and the Incorporation of Biological Pathway Knowledge in Steady-State Pheno...

по Esfahani, Mohammad Shahrokh, Knight, Jason, Zollanvari, Amin, Yoon, Byung-Jun, Dougherty, Edward R.
Опубликовано в: Pattern Recognit (2013)

Distinct biological subtypes and patterns of genome evolution in lymphoma revealed by circulating tumor DNA

по Scherer, Florian, Kurtz, David M., Newman, Aaron M., Stehr, Henning, Craig, Alexander F. M., Esfahani, Mohammad Shahrokh, Lovejoy, Alexander F., Chabon, Jacob J., Klass, Daniel M., Liu, Chih Long, Zhou, Li, Glover, Cynthia, Visser, Brendan C., Poultsides, George A., Advani, Ranjana H., Maeda, Lauren S., Gupta, Neel K., Levy, Ronald, Ohgami, Robert S., Kunder, Christian A., Diehn, Maximilian, Alizadeh, Ash A.
Опубликовано в: Sci Transl Med (2016)

Circulating Tumor DNA Measurements As Early Outcome Predictors in Diffuse Large B-Cell Lymphoma

по Kurtz, David M., Scherer, Florian, Jin, Michael C., Soo, Joanne, Craig, Alexander F.M., Esfahani, Mohammad Shahrokh, Chabon, Jacob J., Stehr, Henning, Liu, Chih Long, Tibshirani, Robert, Maeda, Lauren S., Gupta, Neel K., Khodadoust, Michael S., Advani, Ranjana H., Levy, Ronald, Newman, Aaron M., Dührsen, Ulrich, Hüttmann, Andreas, Meignan, Michel, Casasnovas, René-Olivier, Westin, Jason R., Roschewski, Mark, Wilson, Wyndham H., Gaidano, Gianluca, Rossi, Davide, Diehn, Maximilian, Alizadeh, Ash A.
Опубликовано в: J Clin Oncol (2018)

Early Detection of Molecular Residual Disease in Localized Lung Cancer by Circulating Tumor DNA Profiling

по Chaudhuri, Aadel A., Chabon, Jacob J., Lovejoy, Alexander F., Newman, Aaron M., Stehr, Henning, Azad, Tej D., Khodadoust, Michael S., Esfahani, Mohammad Shahrokh, Liu, Chih Long, Zhou, Li, Scherer, Florian, Kurtz, David M., Say, Carmen, Carter, Justin N., Merriott, David J., Dudley, Jonathan C., Binkley, Michael S., Modlin, Leslie, Padda, Sukhmani K., Gensheimer, Michael F., West, Robert B., Shrager, Joseph B., Neal, Joel W., Wakelee, Heather A., Loo, Billy W., Alizadeh, Ash A., Diehn, Maximilian
Опубликовано в: Cancer Discov (2017)

Inferring gene expression from ribosomal promoter sequences, a crowdsourcing approach

по Meyer, Pablo, Siwo, Geoffrey, Zeevi, Danny, Sharon, Eilon, Norel, Raquel, Segal, Eran, Stolovitzky, Gustavo, Siwo, Geoffrey, Rider, Andrew K., Tan, Asako, Pinapati, Richard S., Emrich, Scott, Chawla, Nitesh, Ferdig, Michael T., Tung, Yi-An, Chen, Yong-Syuan, Chen, Mei-Ju May, Chen, Chien-Yu, Knight, Jason M., Sahraeian, Sayed Mohammad Ebrahim, Esfahani, Mohammad Shahrokh, Dreos, Rene, Bucher, Philipp, Maier, Ezekiel, Saeys, Yvan, Szczurek, Ewa, Myšičková, Alena, Vingron, Martin, Klein, Holger, Kiełbasa, Szymon M., Knisley, Jeff, Bonnell, Jeff, Knisley, Debra, Kursa, Miron B., Rudnicki, Witold R., Bhattacharjee, Madhuchhanda, Sillanpää, Mikko J., Yeung, James, Meysman, Pieter, Rodríguez, Aminael Sánchez, Engelen, Kristof, Marchal, Kathleen, Huang, Yezhou, Mordelet, Fantine, Hartemink, Alexander, Pinello, Luca, Yuan, Guo-Cheng
Опубликовано 2013