Domain-oriented edge-based alignment of protein interaction networks

Por Guo, Xin, Hartemink, Alexander J.
Publicado em 2009

An ensemble model of competitive multi-factor binding of the genome

Por Wasson, Todd, Hartemink, Alexander J.
Publicado em 2009

USING DNASE DIGESTION DATA TO ACCURATELY IDENTIFY TRANSCRIPTION FACTOR BINDING SITES

Por LUO, KAIXUAN, HARTEMINK, ALEXANDER J.
Publicado em 2013

A Nucleosome-Guided Map of Transcription Factor Binding Sites in Yeast

Por Narlikar, Leelavati, Gordân, Raluca, Hartemink, Alexander J
Publicado em 2007

Finding regulatory DNA motifs using alignment-free evolutionary conservation information

Por Gordân, Raluca, Narlikar, Leelavati, Hartemink, Alexander J.
Publicado em 2010

Learning protein–DNA interaction landscapes by integrating experimental data through computational models

Por Zhong, Jianling, Wasson, Todd, Hartemink, Alexander J.
Publicado em 2014

Distinguishing direct versus indirect transcription factor–DNA interactions

Por Gordân, Raluca, Hartemink, Alexander J., Bulyk, Martha L.
Publicado em 2009

INTRINSIC DISORDER WITHIN AND FLANKING THE DNA-BINDING DOMAINS OF HUMAN TRANSCRIPTION FACTORS

Por GUO, XIN, BULYK, MARTHA L., HARTEMINK, ALEXANDER J.
Publicado em 2012

Characterization of dependencies between growth and division in budding yeast

Por Mayhew, Michael B., Iversen, Edwin S., Hartemink, Alexander J.
Publicado no J R Soc Interface (2017)

Genome-wide prediction of imprinted murine genes

Por Luedi, Philippe P., Hartemink, Alexander J., Jirtle, Randy L.
Publicado em 2005

SLICER: inferring branched, nonlinear cellular trajectories from single cell RNA-seq data

Por Welch, Joshua D., Hartemink, Alexander J., Prins, Jan F.
Publicado no Genome Biol (2016)

A branching process model for flow cytometry and budding index measurements in cell synchrony experiments.

Por Orlando, David A., Iversen, Edwin S., Hartemink, Alexander J., Haase, Steven B.
Publicado em 2009

Stability selection for regression-based models of transcription factor–DNA binding specificity

Por Mordelet, Fantine, Horton, John, Hartemink, Alexander J., Engelhardt, Barbara E., Gordân, Raluca
Publicado em 2013

Branching process deconvolution algorithm reveals a detailed cell-cycle transcription program

Por Guo, Xin, Bernard, Allister, Orlando, David A., Haase, Steven B., Hartemink, Alexander J.
Publicado em 2013

Computational Inference of Neural Information Flow Networks

Por Smith, V. Anne, Yu, Jing, Smulders, Tom V, Hartemink, Alexander J, Jarvis, Erich D
Publicado em 2006

A generalized model for multi-marker analysis of cell cycle progression in synchrony experiments

Por Mayhew, Michael B., Robinson, Joshua W., Jung, Boyoun, Haase, Steven B., Hartemink, Alexander J.
Publicado em 2011

Mapping nucleosome positions using DNase-seq

Por Zhong, Jianling, Luo, Kaixuan, Winter, Peter S., Crawford, Gregory E., Iversen, Edwin S., Hartemink, Alexander J.
Publicado no Genome Res (2016)

Identification of Tat-SF1 cellular targets by exon array analysis reveals dual roles in transcription and splicing

Por Miller, Heather B., Robinson, Timothy J., Gordân, Raluca, Hartemink, Alexander J., Garcia-Blanco, Mariano A.
Publicado em 2011

Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading

Por MacAlpine, Heather K., Gordân, Raluca, Powell, Sara K., Hartemink, Alexander J., MacAlpine, David M.
Publicado em 2010

Genome-wide chromatin footprinting reveals changes in replication origin architecture induced by pre-RC assembly

Por Belsky, Jason A., MacAlpine, Heather K., Lubelsky, Yoav, Hartemink, Alexander J., MacAlpine, David M.
Publicado no Genes Dev (2015)