Building a biomedical semantic network in Wikipedia with Semantic Wiki Links

le Good, Benjamin M., Clarke, Erik L., Loguercio, Salvatore, Su, Andrew I.
Foilsithe 2012

Linking genes to diseases with a SNPedia-Gene Wiki mashup

le Good, Benjamin M, Clarke, Erik L, Loguercio, Salvatore, Su, Andrew I
Foilsithe 2012

A task-based approach for Gene Ontology evaluation

le Clarke, Erik L, Loguercio, Salvatore, Good, Benjamin M, Su, Andrew I
Foilsithe 2013

614. Modeling Changes in Gastrointestinal and Respiratory Tract Bacterial Community Diversity Attributable to Common Antibiotic Exposures During Long-Term Acute Care

le Clarke, Erik, Reesey, Emily, Lautenbach, Ebbing, Wernovsky, Magda, Kelly, Brendan J
Foilsithe in Open Forum Infect Dis (2018)

The Gene Wiki in 2011: community intelligence applied to human gene annotation

le Good, Benjamin M., Clarke, Erik L., de Alfaro, Luca, Su, Andrew I.
Foilsithe 2012

swga: a primer design toolkit for selective whole genome amplification

le Clarke, Erik L, Sundararaman, Sesh A, Seifert, Stephanie N, Bushman, Frederic D, Hahn, Beatrice H, Brisson, Dustin
Foilsithe in Bioinformatics (2017)

Sunbeam: an extensible pipeline for analyzing metagenomic sequencing experiments

le Clarke, Erik L., Taylor, Louis J., Zhao, Chunyu, Connell, Andrew, Lee, Jung-Jin, Fett, Bryton, Bushman, Frederic D., Bittinger, Kyle
Foilsithe in Microbiome (2019)

1209. Impact of Respiratory Staphylococcus aureus Abundance on Risk for Ventilator-Associated Pneumonia During Long-Term Care

le Harrigan, James J, Abdallah, Hatem, Clarke, Erik, Lautenbach, Ebbing, Reesey, Emily, Wernovsky, Magda, Tolomeo, Pam C, Morawski, Zygmunt, Jacob, Jerry, Grippi, Michael, Kelly, Brendan
Foilsithe in Open Forum Infect Dis (2020)

Molecular Analysis of Bacterial Contamination on Stethoscopes in an Intensive Care Unit

le Knecht, Vincent R., McGinniss, John E., Shankar, Hari, Clarke, Erik L., Kelly, Brendan J., Imai, Ize, Fitzgerald, Ayannah S., Bittinger, Kyle, Bushman, Frederic D., Collman, Ronald G.
Foilsithe in Infect Control Hosp Epidemiol (2018)

Evaluation of a therapy for Idiopathic Chronic Enterocolitis in rhesus macaques (Macaca mulatta) and linked microbial community correlates

le Taylor, Joshua M., Clarke, Erik L., Baker, Kate, Lauder, Abigail, Kim, Dorothy, Bailey, Aubrey, Wu, Gary D., Collman, Ronald G., Doyle-Meyers, Lara, Russell-Lodrigue, Kasi, Blanchard, James, Bushman, Frederic D., Bohm, Rudolf
Foilsithe in PeerJ (2018)

Optimizing methods and dodging pitfalls in microbiome research

le Kim, Dorothy, Hofstaedter, Casey E., Zhao, Chunyu, Mattei, Lisa, Tanes, Ceylan, Clarke, Erik, Lauder, Abigail, Sherrill-Mix, Scott, Chehoud, Christel, Kelsen, Judith, Conrad, Máire, Collman, Ronald G., Baldassano, Robert, Bushman, Frederic D., Bittinger, Kyle
Foilsithe in Microbiome (2017)

Lack of detection of a human placenta microbiome in samples from preterm and term deliveries

le Leiby, Jacob S., McCormick, Kevin, Sherrill-Mix, Scott, Clarke, Erik L., Kessler, Lyanna R., Taylor, Louis J., Hofstaedter, Casey E., Roche, Aoife M., Mattei, Lisa M., Bittinger, Kyle, Elovitz, Michal A., Leite, Rita, Parry, Samuel, Bushman, Frederic D.
Foilsithe in Microbiome (2018)

Upper Respiratory Dysbiosis with a Facultative-dominated Ecotype in Advanced Lung Disease and Dynamic Change after Lung Transplant

le Simon-Soro, Aurea, Sohn, Michael B., McGinniss, John E., Imai, Ize, Brown, Melanie C., Knecht, Vincent R., Bailey, Aubrey, Clarke, Erik L., Cantu, Edward, Li, Hongzhe, Bittinger, Kyle, Diamond, Joshua M., Christie, Jason D., Bushman, Frederic D., Collman, Ronald G.
Foilsithe in Ann Am Thorac Soc (2019)

Microbial Lineages in Sarcoidosis. A Metagenomic Analysis Tailored for Low–Microbial Content Samples

le Clarke, Erik L., Lauder, Abigail P., Hofstaedter, Casey E., Hwang, Young, Fitzgerald, Ayannah S., Imai, Ize, Biernat, Wojciech, Rękawiecki, Bartłomiej, Majewska, Hanna, Dubaniewicz, Anna, Litzky, Leslie A., Feldman, Michael D., Bittinger, Kyle, Rossman, Milton D., Patterson, Karen C., Bushman, Frederic D., Collman, Ronald G.
Foilsithe in Am J Respir Crit Care Med (2018)

T cell dynamics and response of the microbiota after gene therapy to treat X-linked severe combined immunodeficiency

le Clarke, Erik L., Connell, A. Jesse, Six, Emmanuelle, Kadry, Nadia A., Abbas, Arwa A., Hwang, Young, Everett, John K., Hofstaedter, Casey E., Marsh, Rebecca, Armant, Myriam, Kelsen, Judith, Notarangelo, Luigi D., Collman, Ronald G., Hacein-Bey-Abina, Salima, Kohn, Donald B., Cavazzana, Marina, Fischer, Alain, Williams, David A., Pai, Sung-Yun, Bushman, Frederic D.
Foilsithe in Genome Med (2018)

Modeling altered T-cell development with induced pluripotent stem cells from patients with RAG1-dependent immune deficiencies

le Brauer, Patrick M., Pessach, Itai M., Clarke, Erik, Rowe, Jared H., Ott de Bruin, Lisa, Lee, Yu Nee, Dominguez-Brauer, Carmen, Comeau, Anne M., Awong, Geneve, Felgentreff, Kerstin, Zhang, Yuhang H., Bredemeyer, Andrea, Al-Herz, Waleed, Du, Likun, Ververs, Francesca, Kennedy, Marion, Giliani, Silvia, Keller, Gordon, Sleckman, Barry P., Schatz, David G., Bushman, Frederic D., Notarangelo, Luigi D., Zúñiga-Pflücker, Juan Carlos
Foilsithe in Blood (2016)