Sunbeam: an extensible pipeline for analyzing metagenomic sequencing experiments

BACKGROUND: Analysis of mixed microbial communities using metagenomic sequencing experiments requires multiple preprocessing and analytical steps to interpret the microbial and genetic composition of samples. Analytical steps include quality control, adapter trimming, host decontamination, metagenom...

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Detalhes bibliográficos
Publicado no:Microbiome
Main Authors: Clarke, Erik L., Taylor, Louis J., Zhao, Chunyu, Connell, Andrew, Lee, Jung-Jin, Fett, Bryton, Bushman, Frederic D., Bittinger, Kyle
Formato: Artigo
Idioma:Inglês
Publicado em: BioMed Central 2019
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Software
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC6429786/
https://ncbi.nlm.nih.gov/pubmed/30902113
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s40168-019-0658-x
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