Sunbeam: an extensible pipeline for analyzing metagenomic sequencing experiments

BACKGROUND: Analysis of mixed microbial communities using metagenomic sequencing experiments requires multiple preprocessing and analytical steps to interpret the microbial and genetic composition of samples. Analytical steps include quality control, adapter trimming, host decontamination, metagenom...

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Pubblicato in:Microbiome
Autori principali: Clarke, Erik L., Taylor, Louis J., Zhao, Chunyu, Connell, Andrew, Lee, Jung-Jin, Fett, Bryton, Bushman, Frederic D., Bittinger, Kyle
Natura: Artigo
Lingua:Inglês
Pubblicazione: BioMed Central 2019
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Software
Accesso online:https://ncbi.nlm.nih.gov/pmc/articles/PMC6429786/
https://ncbi.nlm.nih.gov/pubmed/30902113
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s40168-019-0658-x
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