A cylindrical assembly model and dynamics of the Ebola virus VP40 structural matrix

Autor Pavadai, Elumalai, Gerstman, Bernard S., Chapagain, Prem P.
Vydáno v Sci Rep (2018)

Potential RNA-dependent RNA polymerase inhibitors as prospective therapeutics against SARS-CoV-2

Autor Pokhrel, Rudramani, Chapagain, Prem, Siltberg-Liberles, Jessica
Vydáno v J Med Microbiol (2020)

Fluorescent protein barrel fluctuations and oxygen diffusion pathways in mCherry

Autor Chapagain, Prem P., Regmi, Chola K., Castillo, William
Vydáno 2011

Direct observation of a 91 bp LacI-mediated, negatively supercoiled DNA loop by atomic force microscope

Autor Fulcrand, Geraldine, Chapagain, Prem, Dunlap, David, Leng, Fenfei
Vydáno v FEBS Lett (2016)

Investigating molecular interactions between oxidized neuroglobin and cytochrome c

Autor Tiwari, Purushottam B., Chapagain, Prem P., Üren, Aykut
Vydáno v Sci Rep (2018)

Discovery of novel bacterial topoisomerase I inhibitors by use of in silico docking and in vitro assays

Autor Sandhaus, Shayna, Chapagain, Prem P., Tse-Dinh, Yuk-Ching
Vydáno v Sci Rep (2018)

In-silico identification of the vaccine candidate epitopes against the Lassa virus hemorrhagic fever

Autor Baral, Prabin, Pavadai, Elumalai, Gerstman, Bernard S., Chapagain, Prem P.
Vydáno v Sci Rep (2020)

Exploring the Diffusion of Molecular Oxygen in the Red Fluorescent Protein mCherry Using Explicit Oxygen Molecular Dynamics Simulations

Autor Regmi, Chola K., Bhandari, Yuba R., Gerstman, Bernard S., Chapagain, Prem P.
Vydáno 2013

The Ebola virus protein VP40 hexamer enhances the clustering of PI(4,5)P(2) lipids in the plasma membrane

Autor GC, Jeevan B., Gerstman, Bernard S., Stahelin, Robert V., Chapagain, Prem P.
Vydáno v Phys Chem Chem Phys (2016)

Hydrogen Bond Flexibility Correlates with Stokes Shift in mPlum Variants

Autor Konold, Patrick, Regmi, Chola K., Chapagain, Prem P., Gerstman, Bernard S., Jimenez, Ralph
Vydáno 2014

Plasma membrane association facilitates conformational changes in the Marburg virus protein VP40 dimer

Autor Bhattarai, Nisha, GC, Jeevan B., Gerstman, Bernard S., Stahelin, Robert V., Chapagain, Prem P.
Vydáno v RSC Adv (2017)

DNA supercoiling, a critical signal regulating the basal expression of the lac operon in Escherichia coli

Autor Fulcrand, Geraldine, Dages, Samantha, Zhi, Xiaoduo, Chapagain, Prem, Gerstman, Bernard S., Dunlap, David, Leng, Fenfei
Vydáno v Sci Rep (2016)

Conformational Flexibility of the Protein-Protein Interfaces of the Ebola Virus VP40 Structural Matrix Filament

Autor Pavadai, Elumalai, Bhattarai, Nisha, Baral, Prabin, Stahelin, Robert V., Chapagain, Prem P., Gerstman, Bernard S.
Vydáno v J Phys Chem B (2019)

Exploring Structural and Optical Properties of Fluorescent Proteins by Squeezing: Modeling High-Pressure Effects on the mStrawberry and mCherry Red Fluorescent Proteins

Autor Laurent, Adele D., Mironov, Vladimir A., Chapagain, Prem P., Nemukhin, Alexander V., Krylov, Anna I.
Vydáno 2012

Ca(2+) and Mg(2+) modulate conformational dynamics and stability of downstream regulatory element antagonist modulator

Autor Pham, Khoa, Dhulipala, Gangadhar, Gonzalez, Walter G, Gerstman, Bernard S, Regmi, Chola, Chapagain, Prem P, Miksovska, Jaroslava
Vydáno v Protein Sci (2015)

Characterization of molecular interactions between E. coli RNA polymerase and topoisomerase I by molecular simulations

Autor Tiwari, Purushottam Babu, Chapagain, Prem P., Banda, Srikanth, Darici, Yesim, Üren, Aykut, Tse-Dinh, Yuk-Ching
Vydáno v FEBS Lett (2016)

Covalent Complex of DNA and Bacterial Topoisomerase: Implications in Antibacterial Drug Development

Autor Tiwari, Purushottam B., Chapagain, Prem P., Seddek, Ahmed, Annamalai, Thirunavukkarasu, Üren, Aykut, Tse-Dinh, Yuk-Ching
Vydáno v ChemMedChem (2020)

A Conserved Tryptophan in the Ebola Virus Matrix Protein C-Terminal Domain Is Required for Efficient Virus-Like Particle Formation

Autor Johnson, Kristen A., Pokhrel, Rudramani, Budicini, Melissa R., Gerstman, Bernard S., Chapagain, Prem P., Stahelin, Robert V.
Vydáno v Pathogens (2020)

Graphene-VP40 interactions and potential disruption of the Ebola virus matrix filaments

Autor GC, Jeevan B., Pokhrel, Rudramani, Bhattarai, Nisha, Johnson, Kristen A., Gerstman, Bernard S., Stahelin, Robert V., Chapagain, Prem P.
Vydáno v Biochem Biophys Res Commun (2017)

The Integrin Binding Peptide, ATN-161, as a Novel Therapy for SARS-CoV-2 Infection

Autor Beddingfield, Brandon, Iwanaga, Naoki, Chapagain, Prem, Zheng, Wenshu, Roy, Chad J., Hu, Tony Y., Kolls, Jay, Bix, Gregory
Vydáno v bioRxiv (2020)