A cylindrical assembly model and dynamics of the Ebola virus VP40 structural matrix

Por Pavadai, Elumalai, Gerstman, Bernard S., Chapagain, Prem P.
Publicado no Sci Rep (2018)

Potential RNA-dependent RNA polymerase inhibitors as prospective therapeutics against SARS-CoV-2

Por Pokhrel, Rudramani, Chapagain, Prem, Siltberg-Liberles, Jessica
Publicado no J Med Microbiol (2020)

Fluorescent protein barrel fluctuations and oxygen diffusion pathways in mCherry

Por Chapagain, Prem P., Regmi, Chola K., Castillo, William
Publicado em 2011

Direct observation of a 91 bp LacI-mediated, negatively supercoiled DNA loop by atomic force microscope

Por Fulcrand, Geraldine, Chapagain, Prem, Dunlap, David, Leng, Fenfei
Publicado no FEBS Lett (2016)

Investigating molecular interactions between oxidized neuroglobin and cytochrome c

Por Tiwari, Purushottam B., Chapagain, Prem P., Üren, Aykut
Publicado no Sci Rep (2018)

Discovery of novel bacterial topoisomerase I inhibitors by use of in silico docking and in vitro assays

Por Sandhaus, Shayna, Chapagain, Prem P., Tse-Dinh, Yuk-Ching
Publicado no Sci Rep (2018)

In-silico identification of the vaccine candidate epitopes against the Lassa virus hemorrhagic fever

Por Baral, Prabin, Pavadai, Elumalai, Gerstman, Bernard S., Chapagain, Prem P.
Publicado no Sci Rep (2020)

Exploring the Diffusion of Molecular Oxygen in the Red Fluorescent Protein mCherry Using Explicit Oxygen Molecular Dynamics Simulations

Por Regmi, Chola K., Bhandari, Yuba R., Gerstman, Bernard S., Chapagain, Prem P.
Publicado em 2013

The Ebola virus protein VP40 hexamer enhances the clustering of PI(4,5)P(2) lipids in the plasma membrane

Por GC, Jeevan B., Gerstman, Bernard S., Stahelin, Robert V., Chapagain, Prem P.
Publicado no Phys Chem Chem Phys (2016)

Hydrogen Bond Flexibility Correlates with Stokes Shift in mPlum Variants

Por Konold, Patrick, Regmi, Chola K., Chapagain, Prem P., Gerstman, Bernard S., Jimenez, Ralph
Publicado em 2014

Plasma membrane association facilitates conformational changes in the Marburg virus protein VP40 dimer

Por Bhattarai, Nisha, GC, Jeevan B., Gerstman, Bernard S., Stahelin, Robert V., Chapagain, Prem P.
Publicado no RSC Adv (2017)

DNA supercoiling, a critical signal regulating the basal expression of the lac operon in Escherichia coli

Por Fulcrand, Geraldine, Dages, Samantha, Zhi, Xiaoduo, Chapagain, Prem, Gerstman, Bernard S., Dunlap, David, Leng, Fenfei
Publicado no Sci Rep (2016)

Conformational Flexibility of the Protein-Protein Interfaces of the Ebola Virus VP40 Structural Matrix Filament

Por Pavadai, Elumalai, Bhattarai, Nisha, Baral, Prabin, Stahelin, Robert V., Chapagain, Prem P., Gerstman, Bernard S.
Publicado no J Phys Chem B (2019)

Exploring Structural and Optical Properties of Fluorescent Proteins by Squeezing: Modeling High-Pressure Effects on the mStrawberry and mCherry Red Fluorescent Proteins

Por Laurent, Adele D., Mironov, Vladimir A., Chapagain, Prem P., Nemukhin, Alexander V., Krylov, Anna I.
Publicado em 2012

Ca(2+) and Mg(2+) modulate conformational dynamics and stability of downstream regulatory element antagonist modulator

Por Pham, Khoa, Dhulipala, Gangadhar, Gonzalez, Walter G, Gerstman, Bernard S, Regmi, Chola, Chapagain, Prem P, Miksovska, Jaroslava
Publicado no Protein Sci (2015)

Characterization of molecular interactions between E. coli RNA polymerase and topoisomerase I by molecular simulations

Por Tiwari, Purushottam Babu, Chapagain, Prem P., Banda, Srikanth, Darici, Yesim, Üren, Aykut, Tse-Dinh, Yuk-Ching
Publicado no FEBS Lett (2016)

Covalent Complex of DNA and Bacterial Topoisomerase: Implications in Antibacterial Drug Development

Por Tiwari, Purushottam B., Chapagain, Prem P., Seddek, Ahmed, Annamalai, Thirunavukkarasu, Üren, Aykut, Tse-Dinh, Yuk-Ching
Publicado no ChemMedChem (2020)

A Conserved Tryptophan in the Ebola Virus Matrix Protein C-Terminal Domain Is Required for Efficient Virus-Like Particle Formation

Por Johnson, Kristen A., Pokhrel, Rudramani, Budicini, Melissa R., Gerstman, Bernard S., Chapagain, Prem P., Stahelin, Robert V.
Publicado no Pathogens (2020)

Graphene-VP40 interactions and potential disruption of the Ebola virus matrix filaments

Por GC, Jeevan B., Pokhrel, Rudramani, Bhattarai, Nisha, Johnson, Kristen A., Gerstman, Bernard S., Stahelin, Robert V., Chapagain, Prem P.
Publicado no Biochem Biophys Res Commun (2017)

The Integrin Binding Peptide, ATN-161, as a Novel Therapy for SARS-CoV-2 Infection

Por Beddingfield, Brandon, Iwanaga, Naoki, Chapagain, Prem, Zheng, Wenshu, Roy, Chad J., Hu, Tony Y., Kolls, Jay, Bix, Gregory
Publicado no bioRxiv (2020)