DNA methylation of apoptosis genes in rectal cancer predicts patient survival and tumor recurrence

by Benard, Anne, Zeestraten, Eliane C. M., Goossens-Beumer, Inès J., Putter, Hein, van de Velde, Cornelis J. H., Hoon, Dave S. B., Kuppen, Peter J. K.
Published in Apoptosis (2014)

Gene Regulation Network Analysis on Human Prostate Orthografts Highlights a Potential Role for the JMJD6 Regulon in Clinical Prostate Cancer

by Cangiano, Mario, Grudniewska, Magda, Salji, Mark J., Nykter, Matti, Jenster, Guido, Urbanucci, Alfonso, Granchi, Zoraide, Janssen, Bart, Hamilton, Graham, Leung, Hing Y., Beumer, Inès J.
Published in Cancers (Basel) (2021)

Prognostic Value of Polycomb Proteins EZH2, BMI1 and SUZ12 and Histone Modification H3K27me3 in Colorectal Cancer

by Benard, Anne, Goossens-Beumer, Inès J., van Hoesel, Anneke Q., Horati, Hamed, Putter, Hein, Zeestraten, Eliane C. M., van de Velde, Cornelis J. H., Kuppen, Peter J. K.
Published 2014

Histone trimethylation at H3K4, H3K9 and H4K20 correlates with patient survival and tumor recurrence in early-stage colon cancer

by Benard, Anne, Goossens-Beumer, Inès J, van Hoesel, Anneke Q, de Graaf, Wouter, Horati, Hamed, Putter, Hein, Zeestraten, Eliane CM, van de Velde, Cornelis JH, Kuppen, Peter JK
Published in BMC Cancer (2014)

Equivalence of MammaPrint array types in clinical trials and diagnostics

by Beumer, Inès, Witteveen, Anke, Delahaye, Leonie, Wehkamp, Diederik, Snel, Mireille, Dreezen, Christa, Zheng, John, Floore, Arno, Brink, Guido, Chan, Bob, Linn, Sabine, Bernards, Rene, van ’t Veer, Laura, Glas, Annuska
Published in Breast Cancer Res Treat (2016)

Prognostic Value of MammaPrint(®) in Invasive Lobular Breast Cancer

by Beumer, Inès J., Persoon, Marion, Witteveen, Anke, Dreezen, Christa, Chin, Suet-Feung, Sammut, Stephen-John, Snel, Mireille, Caldas, Carlos, Linn, Sabine, van ’t Veer, Laura J., Bernards, Rene, Glas, Annuska M.
Published in Biomark Insights (2016)

A Computational Workflow Translates a 58-Gene Signature to a Formalin-Fixed, Paraffin-Embedded Sample-Based Companion Diagnostic for Personalized Treatment of the BRAF-Mutation-Lik...

by In’t Veld, Sjors G. J. G., Duong, Kim N., Snel, Mireille, Witteveen, Anke, Beumer, Inès J., Delahaye, Leonie J. M. J., Wehkamp, Diederik, Bernards, René, Glas, Annuska M., Tian, Sun
Published in High Throughput (2017)

A breast cancer gene signature for indolent disease

by Delahaye, Leonie J. M. J., Drukker, Caroline A., Dreezen, Christa, Witteveen, Anke, Chan, Bob, Snel, Mireille, Beumer, Inès J., Bernards, Rene, Audeh, M. William, van’t Veer, Laura J., Glas, Annuska M.
Published in Breast Cancer Res Treat (2017)

Copy number alterations and allelic ratio in relation to recurrence of rectal cancer

by Goossens-Beumer, Inès J, Oosting, Jan, Corver, Wim E, Janssen, Marjolein JFW, Janssen, Bart, van Workum, Wilbert, Zeestraten, Eliane CM, van de Velde, Cornelis JH, Morreau, Hans, Kuppen, Peter JK, van Wezel, Tom
Published in BMC Genomics (2015)

High nuclear expression levels of histone-modifying enzymes LSD1, HDAC2 and SIRT1 in tumor cells correlate with decreased survival and increased relapse in breast cancer patients

by Derr, Remco S, van Hoesel, Anneke Q, Benard, Anne, Goossens-Beumer, Inès J, Sajet, Anita, Dekker-Ensink, N Geeske, de Kruijf, Esther M, Bastiaannet, Esther, Smit, Vincent THBM, van de Velde, Cornelis JH, Kuppen, Peter JK
Published 2014

Neoadjuvant tamoxifen synchronizes ERα binding and gene expression profiles related to outcome and proliferation

by Severson, Tesa M., Nevedomskaya, Ekaterina, Peeters, Justine, Kuilman, Thomas, Krijgsman, Oscar, van Rossum, Annelot, Droog, Marjolein, Kim, Yongsoo, Koornstra, Rutger, Beumer, Inès, Glas, Annuska M., Peeper, Daniel, Wesseling, Jelle, Simon, Iris M., Wessels, Lodewyk, Linn, Sabine C., Zwart, Wilbert
Published in Oncotarget (2016)

Controlling technical variation amongst 6693 patient microarrays of the randomized MINDACT trial

by Jacob, Laurent, Witteveen, Anke, Beumer, Inès, Delahaye, Leonie, Wehkamp, Diederik, van den Akker, Jeroen, Snel, Mireille, Chan, Bob, Floore, Arno, Bakx, Niels, Brink, Guido, Poncet, Coralie, Bogaerts, Jan, Delorenzi, Mauro, Piccart, Martine, Rutgers, Emiel, Cardoso, Fatima, Speed, Terence, van ’t Veer, Laura, Glas, Annuska
Published in Commun Biol (2020)