Mg(2+) Binding Promotes SLV as a Scaffold in Varkud Satellite Ribozyme SLI-SLV Kissing Loop Junction

Por Bergonzo, Christina, Cheatham, Thomas E.
Publicado no Biophys J (2017)

Evaluation of Enhanced Sampling Provided by Accelerated Molecular Dynamics with Hamiltonian Replica Exchange Methods

Por Roe, Daniel R., Bergonzo, Christina, Cheatham, Thomas E.
Publicado em 2014

Molecular modeling of nucleic acid structure

Por Galindo-Murillo, Rodrigo, Bergonzo, Christina, Cheatham, Thomas E.
Publicado em 2001

Molecular Modeling of Nucleic Acid Structure: Energy and Sampling

Por Bergonzo, Christina, Galindo-Murillo, Rodrigo, Cheatham, Thomas E.
Publicado em 2001

Molecular Modeling of Nucleic Acid Structure: Setup and Analysis

Por Galindo-Murillo, Rodrigo, Bergonzo, Christina, Cheatham, Thomas E.
Publicado em 2001

Molecular Modeling of Nucleic Acid Structure: Electrostatics and Solvation

Por Bergonzo, Christina, Galindo-Murillo, Rodrigo, Cheatham, Thomas E.
Publicado em 2001

Stem-Loop V of Varkud Satellite RNA Exhibits Characteristics of the Mg(2+) Bound Structure in the Presence of Monovalent Ions

Por Bergonzo, Christina, Hall, Kathleen B., Cheatham, Thomas E.
Publicado no J Phys Chem B (2015)

Divalent Ion Dependent Conformational Changes in an RNA Stem-Loop Observed by Molecular Dynamics

Por Bergonzo, Christina, Hall, Kathleen B., Cheatham, Thomas E.
Publicado no J Chem Theory Comput (2016)

A Partial Nudged Elastic Band Implementation for Use with Large or Explicitly Solvated Systems

Por Bergonzo, Christina, Campbell, Arthur J., Walker, Ross C., Simmerling, Carlos
Publicado em 2009

Highly sampled tetranucleotide and tetraloop motifs enable evaluation of common RNA force fields

Por Bergonzo, Christina, Henriksen, Niel M., Roe, Daniel R., Cheatham, Thomas E.
Publicado no RNA (2015)

Energetic Preference of 8-oxoG Eversion Pathways in a DNA Glycosylase

Por Bergonzo, Christina, Campbell, Arthur J., de los Santos, Carlos, Grollman, Arthur P., Simmerling, Carlos
Publicado em 2011

DNA deformation-coupled recognition of 8-oxoguanine: conformational kinetic gating in human DNA glycosylase

Por Li, Haoquan, Endutkin, Anton V., Bergonzo, Christina, Fu, Lin, Grollman, Arthur, Zharkov, Dmitry O., Simmerling, Carlos
Publicado no J Am Chem Soc (2017)

An Improved Reaction Coordinate for Nucleic Acid Base Flipping Studies

Por Song, Kun, Campbell, Arthur J., Bergonzo, Christina, de los Santos, Carlos, Grollman, Arthur P., Simmerling, Carlos
Publicado no J Chem Theory Comput (2009)

Multidimensional Replica Exchange Molecular Dynamics Yields a Converged Ensemble of an RNA Tetranucleotide

Por Bergonzo, Christina, Henriksen, Niel M., Roe, Daniel R., Swails, Jason M., Roitberg, Adrian E., Cheatham, Thomas E.
Publicado em 2013

A dynamic checkpoint in oxidative lesion discrimination by formamidopyrimidine–DNA glycosylase

Por Li, Haoquan, Endutkin, Anton V., Bergonzo, Christina, Campbell, Arthur J., de los Santos, Carlos, Grollman, Arthur, Zharkov, Dmitry O., Simmerling, Carlos
Publicado no Nucleic Acids Res (2016)

Active destabilization of base pairs by a DNA glycosylase wedge initiates damage recognition

Por Kuznetsov, Nikita A., Bergonzo, Christina, Campbell, Arthur J., Li, Haoquan, Mechetin, Grigory V., de los Santos, Carlos, Grollman, Arthur P., Fedorova, Olga S., Zharkov, Dmitry O., Simmerling, Carlos
Publicado no Nucleic Acids Res (2015)