CRISPRmap: an automated classification of repeat conservation in prokaryotic adaptive immune systems

Yazar: Lange, Sita J., Alkhnbashi, Omer S., Rose, Dominic, Will, Sebastian, Backofen, Rolf
Baskı/Yayın Bilgisi 2013

CRISPRidentify: identification of CRISPR arrays using machine learning approach

Yazar: Mitrofanov, Alexander, Alkhnbashi, Omer S, Shmakov, Sergey A, Makarova, Kira S, Koonin, Eugene V, Backofen, Rolf
Yayımlandı Nucleic Acids Res (2020)

CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci

Yazar: Alkhnbashi, Omer S., Costa, Fabrizio, Shah, Shiraz A., Garrett, Roger A., Saunders, Sita J., Backofen, Rolf
Baskı/Yayın Bilgisi 2014

Structural constraints and enzymatic promiscuity in the Cas6-dependent generation of crRNAs

Yazar: Reimann, Viktoria, Alkhnbashi, Omer S., Saunders, Sita J., Scholz, Ingeborg, Hein, Stephanie, Backofen, Rolf, Hess, Wolfgang R.
Yayımlandı Nucleic Acids Res (2017)

CRISPRcasIdentifier: Machine learning for accurate identification and classification of CRISPR-Cas systems

Yazar: Padilha, Victor A, Alkhnbashi, Omer S, Shah, Shiraz A, de Carvalho, André C P L F, Backofen, Rolf
Yayımlandı Gigascience (2020)

Cross-cleavage activity of Cas6b in crRNA processing of two different CRISPR-Cas systems in Methanosarcina mazei Gö1

Yazar: Nickel, Lisa, Ulbricht, Andrea, Alkhnbashi, Omer S., Förstner, Konrad U., Cassidy, Liam, Weidenbach, Katrin, Backofen, Rolf, Schmitz, Ruth A.
Yayımlandı RNA Biol (2018)

CRISPR-Cas systems in multicellular cyanobacteria

Yazar: Hou, Shengwei, Brenes-Álvarez, Manuel, Reimann, Viktoria, Alkhnbashi, Omer S., Backofen, Rolf, Muro-Pastor, Alicia M., Hess, Wolfgang R.
Yayımlandı RNA Biol (2018)

Comprehensive search for accessory proteins encoded with archaeal and bacterial type III CRISPR-cas gene cassettes reveals 39 new cas gene families

Yazar: Shah, Shiraz A., Alkhnbashi, Omer S., Behler, Juliane, Han, Wenyuan, She, Qunxin, Hess, Wolfgang R., Garrett, Roger A., Backofen, Rolf
Yayımlandı RNA Biol (2018)

Casboundary: automated definition of integral Cas cassettes

Yazar: Padilha, Victor A, Alkhnbashi, Omer S, Tran, Van Dinh, Shah, Shiraz A, Carvalho, André C P L F, Backofen, Rolf
Yayımlandı Bioinformatics (2020)

Adaptation induced by self-targeting in a type I-B CRISPR-Cas system

Yazar: Stachler, Aris-Edda, Wörtz, Julia, Alkhnbashi, Omer S., Turgeman-Grott, Israela, Smith, Rachel, Allers, Thorsten, Backofen, Rolf, Gophna, Uri, Marchfelder, Anita
Yayımlandı J Biol Chem (2020)

The role of Cas8 in type I CRISPR interference

Yazar: Cass, Simon D.B., Haas, Karina A., Stoll, Britta, Alkhnbashi, Omer S., Sharma, Kundan, Urlaub, Henning, Backofen, Rolf, Marchfelder, Anita, Bolt, Edward L.
Yayımlandı Biosci Rep (2015)

Methanosarcina Spherical Virus, a Novel Archaeal Lytic Virus Targeting Methanosarcina Strains

Yazar: Weidenbach, Katrin, Nickel, Lisa, Neve, Horst, Alkhnbashi, Omer S., Künzel, Sven, Kupczok, Anne, Bauersachs, Thorsten, Cassidy, Liam, Tholey, Andreas, Backofen, Rolf, Schmitz, Ruth A.
Yayımlandı J Virol (2017)

Spacer prioritization in CRISPR-Cas9 immunity is enabled by the leader RNA

Yazar: Liao, Chunyu, Sharma, Sahil, Svensson, Sarah L., Kibe, Anuja, Weinberg, Zasha, Alkhnbashi, Omer S., Bischler, Thorsten, Backofen, Rolf, Caliskan, Neva, Sharma, Cynthia M., Beisel, Chase L.
Yayımlandı Nat Microbiol (2022)

The nuts and bolts of the Haloferax CRISPR-Cas system I-B

Yazar: Maier, Lisa-Katharina, Stachler, Aris-Edda, Brendel, Jutta, Stoll, Britta, Fischer, Susan, Haas, Karina A., Schwarz, Thandi S., Alkhnbashi, Omer S., Sharma, Kundan, Urlaub, Henning, Backofen, Rolf, Gophna, Uri, Marchfelder, Anita
Yayımlandı RNA Biol (2018)

CRISPRloci: comprehensive and accurate annotation of CRISPR–Cas systems

Yazar: Alkhnbashi, Omer S, Mitrofanov, Alexander, Bonidia, Robson, Raden, Martin, Tran, Van Dinh, Eggenhofer, Florian, Shah, Shiraz A, Öztürk, Ekrem, Padilha, Victor A, Sanches, Danilo S, de Carvalho, André C P L F, Backofen, Rolf
Yayımlandı Nucleic Acids Res (2021)

Freiburg RNA tools: a central online resource for RNA-focused research and teaching

Yazar: Raden, Martin, Ali, Syed M, Alkhnbashi, Omer S, Busch, Anke, Costa, Fabrizio, Davis, Jason A, Eggenhofer, Florian, Gelhausen, Rick, Georg, Jens, Heyne, Steffen, Hiller, Michael, Kundu, Kousik, Kleinkauf, Robert, Lott, Steffen C, Mohamed, Mostafa M, Mattheis, Alexander, Miladi, Milad, Richter, Andreas S, Will, Sebastian, Wolff, Joachim, Wright, Patrick R, Backofen, Rolf
Yayımlandı Nucleic Acids Res (2018)

An updated evolutionary classification of CRISPR–Cas systems

Yazar: Makarova, Kira S., Wolf, Yuri I., Alkhnbashi, Omer S., Costa, Fabrizio, Shah, Shiraz A., Saunders, Sita J., Barrangou, Rodolphe, Brouns, Stan J. J., Charpentier, Emmanuelle, Haft, Daniel H., Horvath, Philippe, Moineau, Sylvain, Mojica, Francisco J. M., Terns, Rebecca M., Terns, Michael P., White, Malcolm F., Yakunin, Alexander F., Garrett, Roger A., van der Oost, John, Backofen, Rolf, Koonin, Eugene V.
Yayımlandı Nat Rev Microbiol (2015)