SMV1 virus-induced CRISPR spacer acquisition from the conjugative plasmid pMGB1 in Sulfolobus solfataricus P2

av Erdmann, Susanne, Shah, Shiraz A., Garrett, Roger A.
Publicerad 2013

CRISPR adaptive immune systems of Archaea

av Vestergaard, Gisle, Garrett, Roger A, Shah, Shiraz A
Publicerad 2014

Archaeal Extrachromosomal Genetic Elements

av Wang, Haina, Peng, Nan, Shah, Shiraz A., Huang, Li, She, Qunxin
I publikationen Microbiol Mol Biol Rev (2015)

CRISPRStudio: A User-Friendly Software for Rapid CRISPR Array Visualization

av Dion, Moïra B., Labrie, Simon J., Shah, Shiraz A., Moineau, Sylvain
I publikationen Viruses (2018)

Protospacer recognition motifs: Mixed identities and functional diversity

av Shah, Shiraz A., Erdmann, Susanne, Mojica, Francisco J.M., Garrett, Roger A.
Publicerad 2013

CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci

av Alkhnbashi, Omer S., Costa, Fabrizio, Shah, Shiraz A., Garrett, Roger A., Saunders, Sita J., Backofen, Rolf
Publicerad 2014

Predicted highly derived class 1 CRISPR-Cas system in Haloarchaea containing diverged Cas5 and Cas7 homologs but no CRISPR array

av Makarova, Kira S, Karamycheva, Svetlana, Shah, Shiraz A, Vestergaard, Gisle, Garrett, Roger A, Koonin, Eugene V
I publikationen FEMS Microbiol Lett (2019)

Streamlining CRISPR spacer-based bacterial host predictions to decipher the viral dark matter

av Dion, Moïra B, Plante, Pier-Luc, Zufferey, Edwige, Shah, Shiraz A, Corbeil, Jacques, Moineau, Sylvain
I publikationen Nucleic Acids Res (2021)

CRISPRcasIdentifier: Machine learning for accurate identification and classification of CRISPR-Cas systems

av Padilha, Victor A, Alkhnbashi, Omer S, Shah, Shiraz A, de Carvalho, André C P L F, Backofen, Rolf
I publikationen Gigascience (2020)

Toxin inhibition in C. crescentus VapBC1 is mediated by a flexible pseudo-palindromic protein motif and modulated by DNA binding

av Bendtsen, Kirstine L., Xu, Kehan, Luckmann, Majbritt, Winther, Kristoffer S., Shah, Shiraz A., Pedersen, Christian N. S., Brodersen, Ditlev E.
I publikationen Nucleic Acids Res (2017)

Comprehensive search for accessory proteins encoded with archaeal and bacterial type III CRISPR-cas gene cassettes reveals 39 new cas gene families

av Shah, Shiraz A., Alkhnbashi, Omer S., Behler, Juliane, Han, Wenyuan, She, Qunxin, Hess, Wolfgang R., Garrett, Roger A., Backofen, Rolf
I publikationen RNA Biol (2018)

Type IV CRISPR–Cas systems are highly diverse and involved in competition between plasmids

av Pinilla-Redondo, Rafael, Mayo-Muñoz, David, Russel, Jakob, Garrett, Roger A, Randau, Lennart, Sørensen, Søren J, Shah, Shiraz A
I publikationen Nucleic Acids Res (2020)

Casboundary: automated definition of integral Cas cassettes

av Padilha, Victor A, Alkhnbashi, Omer S, Tran, Van Dinh, Shah, Shiraz A, Carvalho, André C P L F, Backofen, Rolf
I publikationen Bioinformatics (2020)

Stygiolobus Rod-Shaped Virus and the Interplay of Crenarchaeal Rudiviruses with the CRISPR Antiviral System

av Vestergaard, Gisle, Shah, Shiraz A., Bize, Ariane, Reitberger, Werner, Reuter, Monika, Phan, Hien, Briegel, Ariane, Rachel, Reinhard, Garrett, Roger A., Prangishvili, David
Publicerad 2008

Genomic analysis of Acidianus hospitalis W1 a host for studying crenarchaeal virus and plasmid life cycles

av You, Xiao-Yan, Liu, Chao, Wang, Sheng-Yue, Jiang, Cheng-Ying, Shah, Shiraz A., Prangishvili, David, She, Qunxin, Liu, Shuang-Jiang, Garrett, Roger A.
Publicerad 2011

CRISPR-Cas Adaptive Immune Systems of the Sulfolobales: Unravelling Their Complexity and Diversity

av Garrett, Roger A., Shah, Shiraz A., Erdmann, Susanne, Liu, Guannan, Mousaei, Marzieh, León-Sobrino, Carlos, Peng, Wenfang, Gudbergsdottir, Soley, Deng, Ling, Vestergaard, Gisle, Peng, Xu, She, Qunxin
I publikationen Life (Basel) (2015)

Virulent coliphages in 1-year-old children fecal samples are fewer, but more infectious than temperate coliphages

av Mathieu, Aurélie, Dion, Moïra, Deng, Ling, Tremblay, Denise, Moncaut, Elisabeth, Shah, Shiraz A., Stokholm, Jakob, Krogfelt, Karen A., Schjørring, Susanne, Bisgaard, Hans, Nielsen, Dennis S., Moineau, Sylvain, Petit, Marie-Agnès
I publikationen Nat Commun (2020)

Prenatal dietary supplements influence the infant airway microbiota in a randomized factorial clinical trial

av Hjelmsø, Mathis H., Shah, Shiraz A., Thorsen, Jonathan, Rasmussen, Morten, Vestergaard, Gisle, Mortensen, Martin S., Brejnrod, Asker, Brix, Susanne, Chawes, Bo, Bønnelykke, Klaus, Sørensen, Søren J., Stokholm, Jakob, Bisgaard, Hans
I publikationen Nat Commun (2020)

CRISPRloci: comprehensive and accurate annotation of CRISPR–Cas systems

av Alkhnbashi, Omer S, Mitrofanov, Alexander, Bonidia, Robson, Raden, Martin, Tran, Van Dinh, Eggenhofer, Florian, Shah, Shiraz A, Öztürk, Ekrem, Padilha, Victor A, Sanches, Danilo S, de Carvalho, André C P L F, Backofen, Rolf
I publikationen Nucleic Acids Res (2021)

Genome Analyses of Icelandic Strains of Sulfolobus islandicus, Model Organisms for Genetic and Virus-Host Interaction Studies

av Guo, Li, Brügger, Kim, Liu, Chao, Shah, Shiraz A., Zheng, Huajun, Zhu, Yongqiang, Wang, Shengyue, Lillestøl, Reidun K., Chen, Lanming, Frank, Jeremy, Prangishvili, David, Paulin, Lars, She, Qunxin, Huang, Li, Garrett, Roger A.
Publicerad 2011