From random walk trajectories to random interlacements /

Por Cerny, Jirí, Teixeira, Augusto Quadros
Publicado em 2012

Enriched Conformational Sampling of DNA and Proteins with a Hybrid Hamiltonian Derived from the Protein Data Bank

Por Peter, Emanuel K., Černý, Jiří
Publicado no Int J Mol Sci (2018)

A Hybrid Hamiltonian for the Accelerated Sampling along Experimental Restraints

Por Peter, Emanuel K., Černý, Jiří
Publicado no Int J Mol Sci (2019)

DNATCO: assignment of DNA conformers at dnatco.org

Por Černý, Jiří, Božíková, Paulína, Schneider, Bohdan
Publicado no Nucleic Acids Res (2016)

A unified dinucleotide alphabet describing both RNA and DNA structures

Por Černý, Jiří, Božíková, Paulína, Svoboda, Jakub, Schneider, Bohdan
Publicado no Nucleic Acids Res (2020)

Automatic workflow for the classification of local DNA conformations

Por Čech, Petr, Kukal, Jaromír, Černý, Jiří, Schneider, Bohdan, Svozil, Daniel
Publicado em 2013

A DNA Structural Alphabet Distinguishes Structural Features of DNA Bound to Regulatory Proteins and in the Nucleosome Core Particle

Por Schneider, Bohdan, Božíková, Paulína, Čech, Petr, Svozil, Daniel, Černý, Jiří
Publicado no Genes (Basel) (2017)

Structural variability of CG-rich DNA 18-mers accommodating double T–T mismatches

Por Kolenko, Petr, Svoboda, Jakub, Černý, Jiří, Charnavets, Tatsiana, Schneider, Bohdan
Publicado no Acta Crystallogr D Struct Biol (2020)

Local dynamics of proteins and DNA evaluated from crystallographic B factors

Por Schneider, Bohdan, Gelly, Jean-Christophe, de Brevern, Alexandre G., Černý, Jiří
Publicado em 2014

NMDA Receptor Opening and Closing—Transitions of a Molecular Machine Revealed by Molecular Dynamics

Por Černý, Jiří, Božíková, Paulína, Balík, Aleš, Marques, Sérgio M., Vyklický, Ladislav
Publicado no Biomolecules (2019)

Evolution of Tertiary Structure of Viral RNA Dependent Polymerases

Por Černý, Jiří, Černá Bolfíková, Barbora, Valdés, James J., Grubhoffer, Libor, Růžek, Daniel
Publicado em 2014

Bordetella adenylate cyclase toxin is a unique ligand of the integrin complement receptor 3

Por Osicka, Radim, Osickova, Adriana, Hasan, Shakir, Bumba, Ladislav, Cerny, Jiri, Sebo, Peter
Publicado no eLife (2015)

Preparation and characterization of novel double-decker rare-earth phthalocyanines substituted with 5-bromo-2-thienyl groups

Por Černý, Jiří, Dokládalová, Lenka, Horáková, Petra, Lyčka, Antonín, Mikysek, Tomáš, Bureš, Filip
Publicado no Chem Cent J (2017)

A DNA structural alphabet provides new insight into DNA flexibility

Por Schneider, Bohdan, Božíková, Paulína, Nečasová, Iva, Čech, Petr, Svozil, Daniel, Černý, Jiří
Publicado no Acta Crystallogr D Struct Biol (2018)

The LILI Motif of M3-S2 Linkers Is a Component of the NMDA Receptor Channel Gate

Por Ladislav, Marek, Cerny, Jiri, Krusek, Jan, Horak, Martin, Balik, Ales, Vyklicky, Ladislav
Publicado no Front Mol Neurosci (2018)

Management Options for Ixodes ricinus-Associated Pathogens: A Review of Prevention Strategies

Por Černý, Jiří, Lynn, Geoffrey, Hrnková, Johana, Golovchenko, Maryna, Rudenko, Natalia, Grubhoffer, Libor
Publicado no Int J Environ Res Public Health (2020)

Structural alphabets for conformational analysis of nucleic acids available at dnatco.datmos.org

Por Černý, Jiří, Božíková, Paulína, Malý, Michal, Tykač, Michal, Biedermannová, Lada, Schneider, Bohdan
Publicado no Acta Crystallogr D Struct Biol (2020)

Role of Zoo-Housed Animals in the Ecology of Ticks and Tick-Borne Pathogens—A Review

Por Hrnková, Johana, Schneiderová, Irena, Golovchenko, Marina, Grubhoffer, Libor, Rudenko, Natalie, Černý, Jiří
Publicado no Pathogens (2021)

Redesigning Protein Cavities as a Strategy for Increasing Affinity in Protein-Protein Interaction: Interferon-γ Receptor 1 as a Model

Por Černý, Jiří, Biedermannová, Lada, Mikulecký, Pavel, Zahradník, Jiří, Charnavets, Tatsiana, Šebo, Peter, Schneider, Bohdan
Publicado no Biomed Res Int (2015)

Bioinformatic analysis of the protein/DNA interface

Por Schneider, Bohdan, Černý, Jiří, Svozil, Daniel, Čech, Petr, Gelly, Jean-Christophe, de Brevern, Alexandre G.
Publicado em 2014