COBEpro: a novel system for predicting continuous B-cell epitopes

Por Sweredoski, Michael J., Baldi, Pierre
Publicado em 2009

O-linked glycosylation sites profiling in Mycobacterium tuberculosis culture filtrate proteins

Por Smith, Geoffrey T., Sweredoski, Michael J., Hess, Sonja
Publicado em 2013

Evaluation and Optimization of Mass Spectrometric Settings during Data-Dependent Acquisition Mode: Focus on LTQ-Orbitrap Mass Analyzers

Por Kalli, Anastasia, Smith, Geoffrey T., Sweredoski, Michael J, Hess, Sonja
Publicado em 2013

ETD Outperforms CID and HCD in the Analysis of the Ubiquitylated Proteome

Por Porras-Yakushi, Tanya R., Sweredoski, Michael J., Hess, Sonja
Publicado no J Am Soc Mass Spectrom (2015)

Identification of a functional docking site in the Rpn1 LRR domain for the UBA-UBL domain protein Ddi1

Por Gomez, Tara A, Kolawa, Natalie, Gee, Marvin, Sweredoski, Michael J, Deshaies, Raymond J
Publicado em 2011

LogViewer: A Software Tool to Visualize Quality Control Parameters to Optimize Proteomics Experiments using Orbitrap and LTQ-FT Mass Spectrometers

Por Sweredoski, Michael J., Smith, Geoffrey T., Kalli, Anastasia, Graham, Robert L. J., Hess, Sonja
Publicado em 2011

Co-evolution of Two GTPases Enables Efficient Protein Targeting in an RNA-less Chloroplast Signal Recognition Particle Pathway

Por Chandrasekar, Sowmya, Sweredoski, Michael J., Sohn, Chang Ho, Hess, Sonja, Shan, Shu-ou
Publicado no J Biol Chem (2017)

Novel Proteomic Tools Reveal Essential Roles of SRP and Importance of Proper Membrane Protein Biogenesis

Por Zhang, Dawei, Sweredoski, Michael J., Graham, Robert L. J., Hess, Sonja, Shan, Shu–ou
Publicado em 2012

Ribosomal proteins produced in excess are degraded by the ubiquitin–proteasome system

Por Sung, Min-Kyung, Reitsma, Justin M., Sweredoski, Michael J., Hess, Sonja, Deshaies, Raymond J.
Publicado no Mol Biol Cell (2016)

Pro-metastatic GPCR CD97 is a Direct Target of Tumor Suppressor microRNA-126

Por Lu, Ying Y., Sweredoski, Michael J., Huss, David, Lansford, Rusty, Hess, Sonja, Tirrell, David A.
Publicado em 2013

Comprehensive proteomic profiling of outer membrane vesicles from Campylobacter jejuni

Por Jang, Kyoung-Soon, Sweredoski, Michael J., Graham, Robert L.J., Hess, Sonja, Clemons, William M.
Publicado no J Proteomics (2013)

Perturbations to the Ubiquitin Conjugate Proteome in Yeast Δubx Mutants Identify Ubx2 as a Regulator of Membrane Lipid Composition

Por Kolawa, Natalie, Sweredoski, Michael J., Graham, Robert L.J., Oania, Robert, Hess, Sonja, Deshaies, Raymond J.
Publicado em 2013

Oxidation of p53 through DNA Charge Transport Involves a Network of Disulfides within the DNA-Binding Domain

Por Schaefer, Kathryn N., Geil, Wendy M., Sweredoski, Michael J., Moradian, Annie, Hess, Sonja, Barton, Jacqueline K.
Publicado no Biochemistry (2015)

Degradation of the Deubiquitinating Enzyme USP33 Is Mediated by p97 and the Ubiquitin Ligase HERC2

Por Chan, Nickie C., den Besten, Willem, Sweredoski, Michael J., Hess, Sonja, Deshaies, Raymond J., Chan, David C.
Publicado em 2014

A Trichomonas vaginalis Rhomboid Protease and Its Substrate Modulate Parasite Attachment and Cytolysis of Host Cells

Por Riestra, Angelica M., Gandhi, Shiv, Sweredoski, Michael J., Moradian, Annie, Hess, Sonja, Urban, Sinisa, Johnson, Patricia J.
Publicado no PLoS Pathog (2015)

SutA is a bacterial transcription factor expressed during slow growth in Pseudomonas aeruginosa

Por Babin, Brett M., Bergkessel, Megan, Sweredoski, Michael J., Moradian, Annie, Hess, Sonja, Newman, Dianne K., Tirrell, David A.
Publicado no Proc Natl Acad Sci U S A (2016)

Identification of Mechanism-Based Inactivation in P450-Catalyzed Cyclopropanation Facilitates Engineering of Improved Enzymes

Por Renata, Hans, Lewis, Russell D., Sweredoski, Michael J., Moradian, Annie, Hess, Sonja, Wang, Z. Jane, Arnold, Frances H.
Publicado no J Am Chem Soc (2016)

Quantitative, Time-Resolved Proteomic Analysis by Combining Bioorthogonal Noncanonical Amino Acid Tagging and Pulsed Stable Isotope Labeling by Amino Acids in Cell Culture

Por Bagert, John D., Xie, Yushu J., Sweredoski, Michael J., Qi, Yutao, Hess, Sonja, Schuman, Erin M., Tirrell, David A.
Publicado em 2014

Phosphorylation of Synaptic GTPase-activating Protein (synGAP) by Ca(2+)/Calmodulin-dependent Protein Kinase II (CaMKII) and Cyclin-dependent Kinase 5 (CDK5) Alters the Ratio of It...

Por Walkup, Ward G., Washburn, Lorraine, Sweredoski, Michael J., Carlisle, Holly J., Graham, Robert L., Hess, Sonja, Kennedy, Mary B.
Publicado no J Biol Chem (2015)

The Steady-State Repertoire of Human SCF Ubiquitin Ligase Complexes Does Not Require Ongoing Nedd8 Conjugation

Por Lee, J. Eugene, Sweredoski, Michael J., Graham, Robert L. J., Kolawa, Natalie J., Smith, Geoffrey T., Hess, Sonja, Deshaies, Raymond J.
Publicado em 2011