Sparse expression bases in cancer reveal tumor drivers

Por Logsdon, Benjamin A., Gentles, Andrew J., Miller, Chris P., Blau, C. Anthony, Becker, Pamela S., Lee, Su-In
Publicado no Nucleic Acids Res (2015)

A versatile computational pipeline for bacterial genome annotation improvement and comparative analysis, with Brucella as a use case

Por Yu, G.X., Snyder, E.E., Boyle, S.M., Crasta, O.R., Czar, M., Mane, S.P., Purkayastha, A., Sobral, B., Setubal, J.C.
Publicado em 2007

Systematic variation in mRNA 3′-processing signals during mouse spermatogenesis

Por Liu, Donglin, Brockman, J. Michael, Dass, Brinda, Hutchins, Lucie N., Singh, Priyam, McCarrey, John R., MacDonald, Clinton C., Graber, Joel H.
Publicado em 2007

Ultraconserved cDNA segments in the human transcriptome exhibit resistance to folding and implicate function in translation and alternative splicing

Por Sathirapongsasuti, J. Fah, Sathira, Nuankanya, Suzuki, Yutaka, Huttenhower, Curtis, Sugano, Sumio
Publicado em 2011

antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification

Por Blin, Kai, Wolf, Thomas, Chevrette, Marc G., Lu, Xiaowen, Schwalen, Christopher J., Kautsar, Satria A., Suarez Duran, Hernando G., de los Santos, Emmanuel L. C., Kim, Hyun Uk, Nave, Mariana, Dickschat, Jeroen S., Mitchell, Douglas A., Shelest, Ekaterina, Breitling, Rainer, Takano, Eriko, Lee, Sang Yup, Weber, Tilmann, Medema, Marnix H.
Publicado no Nucleic Acids Res (2017)

The Comparative Toxicogenomics Database: update 2019

Por Davis, Allan Peter, Grondin, Cynthia J, Johnson, Robin J, Sciaky, Daniela, McMorran, Roy, Wiegers, Jolene, Wiegers, Thomas C, Mattingly, Carolyn J
Publicado no Nucleic Acids Res (2019)

Gene Ontology annotations at SGD: new data sources and annotation methods

Por Hong, Eurie L., Balakrishnan, Rama, Dong, Qing, Christie, Karen R., Park, Julie, Binkley, Gail, Costanzo, Maria C., Dwight, Selina S., Engel, Stacia R., Fisk, Dianna G., Hirschman, Jodi E., Hitz, Benjamin C., Krieger, Cynthia J., Livstone, Michael S., Miyasato, Stuart R., Nash, Robert S., Oughtred, Rose, Skrzypek, Marek S., Weng, Shuai, Wong, Edith D., Zhu, Kathy K., Dolinski, Kara, Botstein, David, Cherry, J. Michael
Publicado em 2008

RNASEQR—a streamlined and accurate RNA-seq sequence analysis program

Por Chen, Leslie Y., Wei, Kuo-Chen, Huang, Abner C.-Y., Wang, Kai, Huang, Chiung-Yin, Yi, Danielle, Tang, Chuan Yi, Galas, David J., Hood, Leroy E.
Publicado em 2012

eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks

Por Clarke, Daniel J B, Kuleshov, Maxim V, Schilder, Brian M, Torre, Denis, Duffy, Mary E, Keenan, Alexandra B, Lachmann, Alexander, Feldmann, Axel S, Gundersen, Gregory W, Silverstein, Moshe C, Wang, Zichen, Ma’ayan, Avi
Publicado no Nucleic Acids Res (2018)

Binding interface and impact on protease cleavage for an RNA aptamer to HIV-1 reverse transcriptase

Por Nguyen, Phuong D M, Zheng, Jie, Gremminger, Thomas J, Qiu, Liming, Zhang, Dong, Tuske, Steve, Lange, Margaret J, Griffin, Patrick R, Arnold, Eddy, Chen, Shi-Jie, Zou, Xiaoqin, Heng, Xiao, Burke, Donald H
Publicado no Nucleic Acids Res (2020)

Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria

Por Glasner, Jeremy D., Plunkett, Guy, Anderson, Bradley D., Baumler, David J., Biehl, Bryan S., Burland, Valerie, Cabot, Eric L., Darling, Aaron E., Mau, Bob, Neeno-Eckwall, Eric C., Pot, David, Qiu, Yu, Rissman, Anna I., Worzella, Sara, Zaremba, Sam, Fedorko, Joel, Hampton, Tom, Liss, Paul, Rusch, Michael, Shaker, Matthew, Shaull, Lorie, Shetty, Panna, Thotakura, Silpa, Whitmore, Jon, Blattner, Frederick R., Greene, John M., Perna, Nicole T.
Publicado em 2008