The YeastGenome app: the Saccharomyces Genome Database at your fingertips

Por Wong, Edith D., Karra, Kalpana, Hitz, Benjamin C., Hong, Eurie L., Cherry, J. Michael
Publicado em 2013

YeastMine—an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit

Por Balakrishnan, Rama, Park, Julie, Karra, Kalpana, Hitz, Benjamin C., Binkley, Gail, Hong, Eurie L., Sullivan, Julie, Micklem, Gos, Michael Cherry, J.
Publicado em 2012

Annotation of functional variation in personal genomes using RegulomeDB

Por Boyle, Alan P., Hong, Eurie L., Hariharan, Manoj, Cheng, Yong, Schaub, Marc A., Kasowski, Maya, Karczewski, Konrad J., Park, Julie, Hitz, Benjamin C., Weng, Shuai, Cherry, J. Michael, Snyder, Michael
Publicado em 2012

Saccharomyces genome database provides new regulation data

Por Costanzo, Maria C., Engel, Stacia R., Wong, Edith D., Lloyd, Paul, Karra, Kalpana, Chan, Esther T., Weng, Shuai, Paskov, Kelley M., Roe, Greg R., Binkley, Gail, Hitz, Benjamin C., Cherry, J. Michael
Publicado em 2014

Integration of new alternative reference strain genome sequences into the Saccharomyces genome database

Por Song, Giltae, Balakrishnan, Rama, Binkley, Gail, Costanzo, Maria C., Dalusag, Kyla, Demeter, Janos, Engel, Stacia, Hellerstedt, Sage T., Karra, Kalpana, Hitz, Benjamin C., Nash, Robert S., Paskov, Kelley, Sheppard, Travis, Skrzypek, Marek, Weng, Shuai, Wong, Edith, Michael Cherry, J.
Publicado no Database (Oxford) (2016)

The Reference Genome Sequence of Saccharomyces cerevisiae: Then and Now

Por Engel, Stacia R., Dietrich, Fred S., Fisk, Dianna G., Binkley, Gail, Balakrishnan, Rama, Costanzo, Maria C., Dwight, Selina S., Hitz, Benjamin C., Karra, Kalpana, Nash, Robert S., Weng, Shuai, Wong, Edith D., Lloyd, Paul, Skrzypek, Marek S., Miyasato, Stuart R., Simison, Matt, Cherry, J. Michael
Publicado em 2013

The Saccharomyces Genome Database Variant Viewer

Por Sheppard, Travis K., Hitz, Benjamin C., Engel, Stacia R., Song, Giltae, Balakrishnan, Rama, Binkley, Gail, Costanzo, Maria C., Dalusag, Kyla S., Demeter, Janos, Hellerstedt, Sage T., Karra, Kalpana, Nash, Robert S., Paskov, Kelley M., Skrzypek, Marek S., Weng, Shuai, Wong, Edith D., Cherry, J. Michael
Publicado no Nucleic Acids Res (2016)

H3K4me3 breadth is linked to cell identity and transcriptional consistency

Por Benayoun, Bérénice A., Pollina, Elizabeth A., Uçar, Duygu, Mahmoudi, Salah, Karra, Kalpana, Wong, Edith D., Devarajan, Keerthana, Daugherty, Aaron C., Kundaje, Anshul B., Mancini, Elena, Hitz, Benjamin C., Gupta, Rakhi, Rando, Thomas A., Baker, Julie C., Snyder, Michael P., Cherry, J. Michael, Brunet, Anne
Publicado em 2014

ENCODE data at the ENCODE portal

Por Sloan, Cricket A., Chan, Esther T., Davidson, Jean M., Malladi, Venkat S., Strattan, J. Seth, Hitz, Benjamin C., Gabdank, Idan, Narayanan, Aditi K., Ho, Marcus, Lee, Brian T., Rowe, Laurence D., Dreszer, Timothy R., Roe, Greg, Podduturi, Nikhil R., Tanaka, Forrest, Hong, Eurie L., Cherry, J. Michael
Publicado no Nucleic Acids Res (2016)

Ontology application and use at the ENCODE DCC

Por Malladi, Venkat S., Erickson, Drew T., Podduturi, Nikhil R., Rowe, Laurence D., Chan, Esther T., Davidson, Jean M., Hitz, Benjamin C., Ho, Marcus, Lee, Brian T., Miyasato, Stuart, Roe, Gregory R., Simison, Matt, Sloan, Cricket A., Strattan, J. Seth, Tanaka, Forrest, Kent, W. James, Cherry, J. Michael, Hong, Eurie L.
Publicado no Database (Oxford) (2015)

Principles of metadata organization at the ENCODE data coordination center

Por Hong, Eurie L., Sloan, Cricket A., Chan, Esther T., Davidson, Jean M., Malladi, Venkat S., Strattan, J. Seth, Hitz, Benjamin C., Gabdank, Idan, Narayanan, Aditi K., Ho, Marcus, Lee, Brian T., Rowe, Laurence D., Dreszer, Timothy R., Roe, Greg R., Podduturi, Nikhil R., Tanaka, Forrest, Hilton, Jason A., Cherry, J. Michael
Publicado no Database (Oxford) (2016)

The Encyclopedia of DNA elements (ENCODE): data portal update

Por Davis, Carrie A, Hitz, Benjamin C, Sloan, Cricket A, Chan, Esther T, Davidson, Jean M, Gabdank, Idan, Hilton, Jason A, Jain, Kriti, Baymuradov, Ulugbek K, Narayanan, Aditi K, Onate, Kathrina C, Graham, Keenan, Miyasato, Stuart R, Dreszer, Timothy R, Strattan, J Seth, Jolanki, Otto, Tanaka, Forrest Y, Cherry, J Michael
Publicado no Nucleic Acids Res (2018)

Saccharomyces Genome Database provides mutant phenotype data

Por Engel, Stacia R., Balakrishnan, Rama, Binkley, Gail, Christie, Karen R., Costanzo, Maria C., Dwight, Selina S., Fisk, Dianna G., Hirschman, Jodi E., Hitz, Benjamin C., Hong, Eurie L., Krieger, Cynthia J., Livstone, Michael S., Miyasato, Stuart R., Nash, Robert, Oughtred, Rose, Park, Julie, Skrzypek, Marek S., Weng, Shuai, Wong, Edith D., Dolinski, Kara, Botstein, David, Cherry, J. Michael
Publicado em 2010

Saccharomyces Genome Database: the genomics resource of budding yeast

Por Cherry, J. Michael, Hong, Eurie L., Amundsen, Craig, Balakrishnan, Rama, Binkley, Gail, Chan, Esther T., Christie, Karen R., Costanzo, Maria C., Dwight, Selina S., Engel, Stacia R., Fisk, Dianna G., Hirschman, Jodi E., Hitz, Benjamin C., Karra, Kalpana, Krieger, Cynthia J., Miyasato, Stuart R., Nash, Rob S., Park, Julie, Skrzypek, Marek S., Simison, Matt, Weng, Shuai, Wong, Edith D.
Publicado em 2012

SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata

Por Hitz, Benjamin C., Rowe, Laurence D., Podduturi, Nikhil R., Glick, David I., Baymuradov, Ulugbek K., Malladi, Venkat S., Chan, Esther T., Davidson, Jean M., Gabdank, Idan, Narayana, Aditi K., Onate, Kathrina C., Hilton, Jason, Ho, Marcus C., Lee, Brian T., Miyasato, Stuart R., Dreszer, Timothy R., Sloan, Cricket A., Strattan, J. Seth, Tanaka, Forrest Y., Hong, Eurie L., Cherry, J. Michael
Publicado no PLoS One (2017)

Gene Ontology annotations at SGD: new data sources and annotation methods

Por Hong, Eurie L., Balakrishnan, Rama, Dong, Qing, Christie, Karen R., Park, Julie, Binkley, Gail, Costanzo, Maria C., Dwight, Selina S., Engel, Stacia R., Fisk, Dianna G., Hirschman, Jodi E., Hitz, Benjamin C., Krieger, Cynthia J., Livstone, Michael S., Miyasato, Stuart R., Nash, Robert S., Oughtred, Rose, Skrzypek, Marek S., Weng, Shuai, Wong, Edith D., Zhu, Kathy K., Dolinski, Kara, Botstein, David, Cherry, J. Michael
Publicado em 2008