The Candida Genome Database (CGD): incorporation of Assembly 22, systematic identifiers and visualization of high throughput sequencing data

Por Skrzypek, Marek S., Binkley, Jonathan, Binkley, Gail, Miyasato, Stuart R., Simison, Matt, Sherlock, Gavin
Publicado no Nucleic Acids Res (2017)

The Candida Genome Database (CGD), a community resource for Candida albicans gene and protein information

Por Arnaud, Martha B., Costanzo, Maria C., Skrzypek, Marek S., Binkley, Gail, Lane, Christopher, Miyasato, Stuart R., Sherlock, Gavin
Publicado em 2005

Sequence resources at the Candida Genome Database

Por Arnaud, Martha B., Costanzo, Maria C., Skrzypek, Marek S., Shah, Prachi, Binkley, Gail, Lane, Christopher, Miyasato, Stuart R., Sherlock, Gavin
Publicado em 2007

New tools at the Candida Genome Database: biochemical pathways and full-text literature search

Por Skrzypek, Marek S., Arnaud, Martha B., Costanzo, Maria C., Inglis, Diane O., Shah, Prachi, Binkley, Gail, Miyasato, Stuart R., Sherlock, Gavin
Publicado em 2010

The Candida genome database incorporates multiple Candida species: multispecies search and analysis tools with curated gene and protein information for Candida albicans and Candida...

Por Inglis, Diane O., Arnaud, Martha B., Binkley, Jonathan, Shah, Prachi, Skrzypek, Marek S., Wymore, Farrell, Binkley, Gail, Miyasato, Stuart R., Simison, Matt, Sherlock, Gavin
Publicado em 2012

The Candida Genome Database: The new homology information page highlights protein similarity and phylogeny

Por Binkley, Jonathan, Arnaud, Martha B., Inglis, Diane O., Skrzypek, Marek S., Shah, Prachi, Wymore, Farrell, Binkley, Gail, Miyasato, Stuart R., Simison, Matt, Sherlock, Gavin
Publicado em 2014

The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations

Por Cerqueira, Gustavo C., Arnaud, Martha B., Inglis, Diane O., Skrzypek, Marek S., Binkley, Gail, Simison, Matt, Miyasato, Stuart R., Binkley, Jonathan, Orvis, Joshua, Shah, Prachi, Wymore, Farrell, Sherlock, Gavin, Wortman, Jennifer R.
Publicado em 2014

The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community

Por Arnaud, Martha B., Chibucos, Marcus C., Costanzo, Maria C., Crabtree, Jonathan, Inglis, Diane O., Lotia, Adil, Orvis, Joshua, Shah, Prachi, Skrzypek, Marek S., Binkley, Gail, Miyasato, Stuart R., Wortman, Jennifer R., Sherlock, Gavin
Publicado em 2010

Saccharomyces genome database informs human biology

Por Skrzypek, Marek S, Nash, Robert S, Wong, Edith D, MacPherson, Kevin A, Hellerstedt, Sage T, Engel, Stacia R, Karra, Kalpana, Weng, Shuai, Sheppard, Travis K, Binkley, Gail, Simison, Matt, Miyasato, Stuart R, Cherry, J Michael
Publicado no Nucleic Acids Res (2018)

The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources

Por Arnaud, Martha B., Cerqueira, Gustavo C., Inglis, Diane O., Skrzypek, Marek S., Binkley, Jonathan, Chibucos, Marcus C., Crabtree, Jonathan, Howarth, Clinton, Orvis, Joshua, Shah, Prachi, Wymore, Farrell, Binkley, Gail, Miyasato, Stuart R., Simison, Matt, Sherlock, Gavin, Wortman, Jennifer R.
Publicado em 2012

The Reference Genome Sequence of Saccharomyces cerevisiae: Then and Now

Por Engel, Stacia R., Dietrich, Fred S., Fisk, Dianna G., Binkley, Gail, Balakrishnan, Rama, Costanzo, Maria C., Dwight, Selina S., Hitz, Benjamin C., Karra, Kalpana, Nash, Robert S., Weng, Shuai, Wong, Edith D., Lloyd, Paul, Skrzypek, Marek S., Miyasato, Stuart R., Simison, Matt, Cherry, J. Michael
Publicado em 2013

Prevention of data duplication for high throughput sequencing repositories

Por Gabdank, Idan, Chan, Esther T, Davidson, Jean M, Hilton, Jason A, Davis, Carrie A, Baymuradov, Ulugbek K, Narayanan, Aditi, Onate, Kathrina C, Graham, Keenan, Miyasato, Stuart R, Dreszer, Timothy R, Strattan, J Seth, Jolanki, Otto, Tanaka, Forrest Y, Hitz, Benjamin C, Sloan, Cricket A, Cherry, J Michael
Publicado no Database (Oxford) (2018)

The Encyclopedia of DNA elements (ENCODE): data portal update

Por Davis, Carrie A, Hitz, Benjamin C, Sloan, Cricket A, Chan, Esther T, Davidson, Jean M, Gabdank, Idan, Hilton, Jason A, Jain, Kriti, Baymuradov, Ulugbek K, Narayanan, Aditi K, Onate, Kathrina C, Graham, Keenan, Miyasato, Stuart R, Dreszer, Timothy R, Strattan, J Seth, Jolanki, Otto, Tanaka, Forrest Y, Cherry, J Michael
Publicado no Nucleic Acids Res (2018)

Saccharomyces Genome Database provides mutant phenotype data

Por Engel, Stacia R., Balakrishnan, Rama, Binkley, Gail, Christie, Karen R., Costanzo, Maria C., Dwight, Selina S., Fisk, Dianna G., Hirschman, Jodi E., Hitz, Benjamin C., Hong, Eurie L., Krieger, Cynthia J., Livstone, Michael S., Miyasato, Stuart R., Nash, Robert, Oughtred, Rose, Park, Julie, Skrzypek, Marek S., Weng, Shuai, Wong, Edith D., Dolinski, Kara, Botstein, David, Cherry, J. Michael
Publicado em 2010

Saccharomyces Genome Database: the genomics resource of budding yeast

Por Cherry, J. Michael, Hong, Eurie L., Amundsen, Craig, Balakrishnan, Rama, Binkley, Gail, Chan, Esther T., Christie, Karen R., Costanzo, Maria C., Dwight, Selina S., Engel, Stacia R., Fisk, Dianna G., Hirschman, Jodi E., Hitz, Benjamin C., Karra, Kalpana, Krieger, Cynthia J., Miyasato, Stuart R., Nash, Rob S., Park, Julie, Skrzypek, Marek S., Simison, Matt, Weng, Shuai, Wong, Edith D.
Publicado em 2012

SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata

Por Hitz, Benjamin C., Rowe, Laurence D., Podduturi, Nikhil R., Glick, David I., Baymuradov, Ulugbek K., Malladi, Venkat S., Chan, Esther T., Davidson, Jean M., Gabdank, Idan, Narayana, Aditi K., Onate, Kathrina C., Hilton, Jason, Ho, Marcus C., Lee, Brian T., Miyasato, Stuart R., Dreszer, Timothy R., Sloan, Cricket A., Strattan, J. Seth, Tanaka, Forrest Y., Hong, Eurie L., Cherry, J. Michael
Publicado no PLoS One (2017)

Gene Ontology annotations at SGD: new data sources and annotation methods

Por Hong, Eurie L., Balakrishnan, Rama, Dong, Qing, Christie, Karen R., Park, Julie, Binkley, Gail, Costanzo, Maria C., Dwight, Selina S., Engel, Stacia R., Fisk, Dianna G., Hirschman, Jodi E., Hitz, Benjamin C., Krieger, Cynthia J., Livstone, Michael S., Miyasato, Stuart R., Nash, Robert S., Oughtred, Rose, Skrzypek, Marek S., Weng, Shuai, Wong, Edith D., Zhu, Kathy K., Dolinski, Kara, Botstein, David, Cherry, J. Michael
Publicado em 2008