Open Data Structures: An Introduction

by Pat Morin
Published in OPEL (Open Paths to Enriched Learning) (2013)

BioDIFF: An Effective Fast Change Detection Algorithm for Biological Annotations

by Song, Yang, Bhowmick, Sourav S., Dewey, C. Forbes
Published in Advances in Databases: Concepts, Systems and Applications (2007)

DBS: a fast and informative segmentation algorithm for DNA copy number analysis

by Ruan, Jun, Liu, Zhen, Sun, Ming, Wang, Yue, Yue, Junqiu, Yu, Guoqiang
Published in BMC Bioinformatics (2019)

DBS: a fast and informative segmentation algorithm for DNA copy number analysis

by Jun Ruan, Zhen Liu, Ming Sun, Yue Wang, Junqiu Yue, Guoqiang Yu
Published 2019-01-01

The Index-Based Subgraph Matching Algorithm (ISMA): Fast Subgraph Enumeration in Large Networks Using Optimized Search Trees

by Demeyer, Sofie, Michoel, Tom, Fostier, Jan, Audenaert, Pieter, Pickavet, Mario, Demeester, Piet
Published 2013

A highly efficient multi-core algorithm for clustering extremely large datasets

by Kraus, Johann M, Kestler, Hans A
Published 2010

Trie-based Rule Processing for Clinical NLP: a use-case study of n-trie, making the ConText algorithm more efficient and scalable

by Shi, Jianlin, Hurdle, John F.
Published in J Biomed Inform (2018)

BatMass: a Java software platform for LC/MS data visualization in proteomics and metabolomics

by Avtonomov, Dmitry, Raskind, Alexander, Nesvizhskii, Alexey I.
Published in J Proteome Res (2016)

MET: a Java package for fast molecule equivalence testing

by Schüler, Jördis-Ann, Rechner, Steffen, Müller-Hannemann, Matthias
Published in J Cheminform (2020)

MutScan: fast detection and visualization of target mutations by scanning FASTQ data

by Chen, Shifu, Huang, Tanxiao, Wen, Tiexiang, Li, Hong, Xu, Mingyan, Gu, Jia
Published in BMC Bioinformatics (2018)

ROMA: Representation and Quantification of Module Activity from Target Expression Data

by Martignetti, Loredana, Calzone, Laurence, Bonnet, Eric, Barillot, Emmanuel, Zinovyev, Andrei
Published in Front Genet (2016)

TraceSpecks: A Software for Automated Idealization of Noisy Patch-Clamp and Imaging Data

by Shah, Syed Islamuddin, Demuro, Angelo, Mak, Don-On Daniel, Parker, Ian, Pearson, John E., Ullah, Ghanim
Published in Biophys J (2018)

miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data

by An, Jiyuan, Lai, John, Lehman, Melanie L., Nelson, Colleen C.
Published 2013

GC4S: A bioinformatics-oriented Java software library of reusable graphical user interface components

by López-Fernández, Hugo, Reboiro-Jato, Miguel, Glez-Peña, Daniel, Laza, Rosalía, Pavón, Reyes, Fdez-Riverola, Florentino
Published in PLoS One (2018)

FastPval: a fast and memory efficient program to calculate very low P-values from empirical distribution

by Li, Mulin Jun, Sham, Pak Chung, Wang, Junwen
Published 2010

Genometa--a fast and accurate classifier for short metagenomic shotgun reads.

by Colin F Davenport, Jens Neugebauer, Nils Beckmann, Benedikt Friedrich, Burim Kameri, Svea Kokott, Malte Paetow, Björn Siekmann, Matthias Wieding-Drewes, Markus Wienhöfer, Stefan Wolf, Burkhard Tümmler, Volker Ahlers, Frauke Sprengel
Published 2012-01-01

Genometa - A Fast and Accurate Classifier for Short Metagenomic Shotgun Reads

by Davenport, Colin F., Neugebauer, Jens, Beckmann, Nils, Friedrich, Benedikt, Kameri, Burim, Kokott, Svea, Paetow, Malte, Siekmann, Björn, Wieding-Drewes, Matthias, Wienhöfer, Markus, Wolf, Stefan, Tümmler, Burkhard, Ahlers, Volker, Sprengel, Frauke
Published 2012

Deconvolution of Two-Dimensional NMR Spectra by Fast Maximum Likelihood Reconstruction: Application to Quantitative Metabolomics

by Chylla, Roger A., Hu, Kaifeng, Ellinger, James J., Markley, John L.
Published 2011

SmartPhase: Accurate and fast phasing of heterozygous variant pairs for genetic diagnosis of rare diseases

by Hager, Paul, Mewes, Hans-Werner, Rohlfs, Meino, Klein, Christoph, Jeske, Tim
Published in PLoS Comput Biol (2020)

C-State: an interactive web app for simultaneous multi-gene visualization and comparative epigenetic pattern search

by Divya Tej Sowpati, Surabhi Srivastava, Jyotsna Dhawan, Rakesh K Mishra
Published 2017-09-01