Výsledky vyhledávání - ((((java algorithm) OR (davar algorithm))) or (((data algorithm) or (fast algorithms))))

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BioDIFF: An Effective Fast Change Detection Algorithm for Biological Annotations

Autor Song, Yang, Bhowmick, Sourav S., Dewey, C. Forbes
Vydáno v Advances in Databases: Concepts, Systems and Applications (2007)

“... changes to the underlying biological data sources. In this paper, we present an algorithm called BioDiff...”
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Open Data Structures: An Introduction

Autor Pat Morin
Vydáno v OPEL (Open Paths to Enriched Learning) (2013)

Témata: “...algorithms...”
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DBS: a fast and informative segmentation algorithm for DNA copy number analysis

Autor Ruan, Jun, Liu, Zhen, Sun, Ming, Wang, Yue, Yue, Junqiu, Yu, Guoqiang
Vydáno v BMC Bioinformatics (2019)

“... and efficient segmentation algorithms are required when characterizing high density CNAs data. RESULTS: A fast...”
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DBS: a fast and informative segmentation algorithm for DNA copy number analysis

Autor Jun Ruan, Zhen Liu, Ming Sun, Yue Wang, Junqiu Yue, Guoqiang Yu
Vydáno 2019-01-01

“... and efficient segmentation algorithms are required when characterizing high density CNAs data. Results A fast...”
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The Index-Based Subgraph Matching Algorithm (ISMA): Fast Subgraph Enumeration in Large Networks Using Optimized Search Trees

Autor Demeyer, Sofie, Michoel, Tom, Fostier, Jan, Audenaert, Pieter, Pickavet, Mario, Demeester, Piet
Vydáno 2013

“...Subgraph matching algorithms are designed to find all instances of predefined subgraphs in a large...”
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A highly efficient multi-core algorithm for clustering extremely large datasets

Autor Kraus, Johann M, Kestler, Hans A
Vydáno 2010

“.... This demand is likely to increase. Standard algorithms for analyzing data, such as cluster algorithms, need...”
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MET: a Java package for fast molecule equivalence testing

Autor Schüler, Jördis-Ann, Rechner, Steffen, Müller-Hannemann, Matthias
Vydáno v J Cheminform (2020)

“... on extensive computational experiments, we show that our algorithm is significantly faster than existing...”
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Trie-based Rule Processing for Clinical NLP: a use-case study of n-trie, making the ConText algorithm more efficient and scalable

Autor Shi, Jianlin, Hurdle, John F.
Vydáno v J Biomed Inform (2018)

“... in an implementation (called FastContext) of the ConText algorithm and compared its processing speed and accuracy...”
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BatMass: a Java software platform for LC/MS data visualization in proteomics and metabolomics

Autor Avtonomov, Dmitry, Raskind, Alexander, Nesvizhskii, Alexey I.
Vydáno v J Proteome Res (2016)

“... data through its fast visualization capabilities. It also serves as a testbed for developers of LC/MS...”
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MutScan: fast detection and visualization of target mutations by scanning FASTQ data

Autor Chen, Shifu, Huang, Tanxiao, Wen, Tiexiang, Li, Hong, Xu, Mingyan, Gu, Jia
Vydáno v BMC Bioinformatics (2018)

“... such as HTML and JavaScript. Algorithms such as rolling hash and bloom filter are applied to accelerate...”
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GC4S: A bioinformatics-oriented Java software library of reusable graphical user interface components

Autor López-Fernández, Hugo, Reboiro-Jato, Miguel, Glez-Peña, Daniel, Laza, Rosalía, Pavón, Reyes, Fdez-Riverola, Florentino
Vydáno v PLoS One (2018)

“... and fast implementations of different data analysis algorithms, these software applications should also...”
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FastPval: a fast and memory efficient program to calculate very low P-values from empirical distribution

Autor Li, Mulin Jun, Sham, Pak Chung, Wang, Junwen
Vydáno 2010

“..., the java GUI and source code, and the java web start server with example data and introduction...”
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Genometa--a fast and accurate classifier for short metagenomic shotgun reads.

Autor Colin F Davenport, Jens Neugebauer, Nils Beckmann, Benedikt Friedrich, Burim Kameri, Svea Kokott, Malte Paetow, Björn Siekmann, Matthias Wieding-Drewes, Markus Wienhöfer, Stefan Wolf, Burkhard Tümmler, Volker Ahlers, Frauke Sprengel
Vydáno 2012-01-01

“...Metagenomic studies use high-throughput sequence data to investigate microbial communities in situ...”
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Genometa - A Fast and Accurate Classifier for Short Metagenomic Shotgun Reads

Autor Davenport, Colin F., Neugebauer, Jens, Beckmann, Nils, Friedrich, Benedikt, Kameri, Burim, Kokott, Svea, Paetow, Malte, Siekmann, Björn, Wieding-Drewes, Matthias, Wienhöfer, Markus, Wolf, Stefan, Tümmler, Burkhard, Ahlers, Volker, Sprengel, Frauke
Vydáno 2012

“...SUMMARY: Metagenomic studies use high-throughput sequence data to investigate microbial communities...”
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Application of Fast Dynamic Allan Variance for the Characterization of FOGs-Based Measurement While Drilling

Autor Wang, Lu, Zhang, Chunxi, Gao, Shuang, Wang, Tao, Lin, Tie, Li, Xianmu
Vydáno v Sensors (Basel) (2016)

“... with long time series, a fast DAVAR algorithm has been developed to accelerate the computation speed...”
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Deconvolution of Two-Dimensional NMR Spectra by Fast Maximum Likelihood Reconstruction: Application to Quantitative Metabolomics

Autor Chylla, Roger A., Hu, Kaifeng, Ellinger, James J., Markley, John L.
Vydáno 2011

“...[Image: see text] We have developed an algorithm called fast maximum likelihood reconstruction...”
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SmartPhase: Accurate and fast phasing of heterozygous variant pairs for genetic diagnosis of rare diseases

Autor Hager, Paul, Mewes, Hans-Werner, Rohlfs, Meino, Klein, Christoph, Jeske, Tim
Vydáno v PLoS Comput Biol (2020)

“.... The phasing algorithm of SmartPhase creates haplotypes using both parental genotype information and reads...”
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ROMA: Representation and Quantification of Module Activity from Target Expression Data

Autor Martignetti, Loredana, Calzone, Laurence, Bonnet, Eric, Barillot, Emmanuel, Zinovyev, Andrei
Vydáno v Front Genet (2016)

“...) Java software, designed for fast and robust computation of the activity of gene sets (or modules...”
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TraceSpecks: A Software for Automated Idealization of Noisy Patch-Clamp and Imaging Data

Autor Shah, Syed Islamuddin, Demuro, Angelo, Mak, Don-On Daniel, Parker, Ian, Pearson, John E., Ullah, Ghanim
Vydáno v Biophys J (2018)

“... graphical interface and test the algorithm on both synthetic and experimental data from the patch-clamp...”
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miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data

Autor An, Jiyuan, Lai, John, Lehman, Melanie L., Nelson, Colleen C.
Vydáno 2013

“... strategies to identify precursor miRNAs. miRDeep* has a user-friendly graphic interface and accepts raw data...”
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