STRONG: metagenomics strain resolution on assembly graphs

We introduce STrain Resolution ON assembly Graphs (STRONG), which identifies strains de novo, from multiple metagenome samples. STRONG performs coassembly, and binning into metagenome assembled genomes (MAGs), and stores the coassembly graph prior to variant simplification. This enables the subgraph...

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Publicat a:Genome Biol
Autors principals: Quince, Christopher, Nurk, Sergey, Raguideau, Sebastien, James, Robert, Soyer, Orkun S., Summers, J. Kimberly, Limasset, Antoine, Eren, A. Murat, Chikhi, Rayan, Darling, Aaron E.
Format: Artigo
Idioma:Inglês
Publicat: BioMed Central 2021
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Method
Accés en línia:https://ncbi.nlm.nih.gov/pmc/articles/PMC8311964/
https://ncbi.nlm.nih.gov/pubmed/34311761
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s13059-021-02419-7
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