Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods

Whole genome sequencing (WGS) enables complete characterization of bacterial pathogenic isolates at single nucleotide resolution, making it the ultimate tool for routine surveillance and outbreak investigation. The lack of standardization, and the variation regarding bioinformatics workflows and par...

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Detalhes bibliográficos
Publicado no:Microb Genom
Main Authors: Bogaerts, Bert, Nouws, Stéphanie, Verhaegen, Bavo, Denayer, Sarah, Van Braekel, Julien, Winand, Raf, Fu, Qiang, Crombé, Florence, Piérard, Denis, Marchal, Kathleen, Roosens, Nancy H. C., De Keersmaecker, Sigrid C. J., Vanneste, Kevin
Formato: Artigo
Idioma:Inglês
Publicado em: Microbiology Society 2021
Assuntos:
Research Articles
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC8190621/
https://ncbi.nlm.nih.gov/pubmed/33656437
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1099/mgen.0.000531
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