Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods

Whole genome sequencing (WGS) enables complete characterization of bacterial pathogenic isolates at single nucleotide resolution, making it the ultimate tool for routine surveillance and outbreak investigation. The lack of standardization, and the variation regarding bioinformatics workflows and par...

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Vydáno v:Microb Genom
Hlavní autoři: Bogaerts, Bert, Nouws, Stéphanie, Verhaegen, Bavo, Denayer, Sarah, Van Braekel, Julien, Winand, Raf, Fu, Qiang, Crombé, Florence, Piérard, Denis, Marchal, Kathleen, Roosens, Nancy H. C., De Keersmaecker, Sigrid C. J., Vanneste, Kevin
Médium: Artigo
Jazyk:Inglês
Vydáno: Microbiology Society 2021
Témata:
Research Articles
On-line přístup:https://ncbi.nlm.nih.gov/pmc/articles/PMC8190621/
https://ncbi.nlm.nih.gov/pubmed/33656437
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1099/mgen.0.000531
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