Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods

Whole genome sequencing (WGS) enables complete characterization of bacterial pathogenic isolates at single nucleotide resolution, making it the ultimate tool for routine surveillance and outbreak investigation. The lack of standardization, and the variation regarding bioinformatics workflows and par...

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Tallennettuna:
Bibliografiset tiedot
Julkaisussa:Microb Genom
Päätekijät: Bogaerts, Bert, Nouws, Stéphanie, Verhaegen, Bavo, Denayer, Sarah, Van Braekel, Julien, Winand, Raf, Fu, Qiang, Crombé, Florence, Piérard, Denis, Marchal, Kathleen, Roosens, Nancy H. C., De Keersmaecker, Sigrid C. J., Vanneste, Kevin
Aineistotyyppi: Artigo
Kieli:Inglês
Julkaistu: Microbiology Society 2021
Aiheet:
Research Articles
Linkit:https://ncbi.nlm.nih.gov/pmc/articles/PMC8190621/
https://ncbi.nlm.nih.gov/pubmed/33656437
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1099/mgen.0.000531
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