Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods

Whole genome sequencing (WGS) enables complete characterization of bacterial pathogenic isolates at single nucleotide resolution, making it the ultimate tool for routine surveillance and outbreak investigation. The lack of standardization, and the variation regarding bioinformatics workflows and par...

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Dades bibliogràfiques
Publicat a:Microb Genom
Autors principals: Bogaerts, Bert, Nouws, Stéphanie, Verhaegen, Bavo, Denayer, Sarah, Van Braekel, Julien, Winand, Raf, Fu, Qiang, Crombé, Florence, Piérard, Denis, Marchal, Kathleen, Roosens, Nancy H. C., De Keersmaecker, Sigrid C. J., Vanneste, Kevin
Format: Artigo
Idioma:Inglês
Publicat: Microbiology Society 2021
Matèries:
Research Articles
Accés en línia:https://ncbi.nlm.nih.gov/pmc/articles/PMC8190621/
https://ncbi.nlm.nih.gov/pubmed/33656437
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1099/mgen.0.000531
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