Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity

The COVID-19 pandemic has led to a rapid accumulation of SARS-CoV-2 genomes, enabling genomic epidemiology on local and global scales. Collections of genomes from resources such as GISAID must be subsampled to enable computationally feasible phylogenetic and other analyses. We present genome-sampler...

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Publicado en:F1000Res
Main Authors: Bolyen, Evan, Dillon, Matthew R., Bokulich, Nicholas A., Ladner, Jason T., Larsen, Brendan B., Hepp, Crystal M., Lemmer, Darrin, Sahl, Jason W., Sanchez, Andrew, Holdgraf, Chris, Sewell, Chris, Choudhury, Aakash G., Stachurski, John, McKay, Matthew, Simard, Anthony, Engelthaler, David M., Worobey, Michael, Keim, Paul, Caporaso, J. Gregory
Formato: Artigo
Idioma:Inglês
Publicado: F1000 Research Limited 2020
Assuntos:
Software Tool Article
Acceso en liña:https://ncbi.nlm.nih.gov/pmc/articles/PMC7814287/
https://ncbi.nlm.nih.gov/pubmed/33500774
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.12688/f1000research.24751.2
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