Whole-Genome k-mer Topic Modeling Associates Bacterial Families

Alignment-free k-mer-based algorithms in whole genome sequence comparisons remain an ongoing challenge. Here, we explore the possibility to use Topic Modeling for organism whole-genome comparisons. We analyzed 30 complete genomes from three bacterial families by topic modeling. For this, each genome...

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Bibliografiske detaljer
Udgivet i:Genes (Basel)
Main Authors: Borrayo, Ernesto, May-Canche, Isaias, Paredes, Omar, Morales, J. Alejandro, Romo-Vázquez, Rebeca, Vélez-Pérez, Hugo
Format: Artigo
Sprog:Inglês
Udgivet: MDPI 2020
Fag:
Brief Report
Online adgang:https://ncbi.nlm.nih.gov/pmc/articles/PMC7074292/
https://ncbi.nlm.nih.gov/pubmed/32075081
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.3390/genes11020197
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