Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines

BACKGROUND: Accurately identifying single-nucleotide polymorphisms (SNPs) from bacterial sequencing data is an essential requirement for using genomics to track transmission and predict important phenotypes such as antimicrobial resistance. However, most previous performance evaluations of SNP calli...

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Dettagli Bibliografici
Pubblicato in:Gigascience
Autori principali: Bush, Stephen J, Foster, Dona, Eyre, David W, Clark, Emily L, De Maio, Nicola, Shaw, Liam P, Stoesser, Nicole, Peto, Tim E A, Crook, Derrick W, Walker, A Sarah
Natura: Artigo
Lingua:Inglês
Pubblicazione: Oxford University Press 2020
Soggetti:
Research
Accesso online:https://ncbi.nlm.nih.gov/pmc/articles/PMC7002876/
https://ncbi.nlm.nih.gov/pubmed/32025702
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/gigascience/giaa007
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