Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines

BACKGROUND: Accurately identifying single-nucleotide polymorphisms (SNPs) from bacterial sequencing data is an essential requirement for using genomics to track transmission and predict important phenotypes such as antimicrobial resistance. However, most previous performance evaluations of SNP calli...

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Publicat a:Gigascience
Autors principals: Bush, Stephen J, Foster, Dona, Eyre, David W, Clark, Emily L, De Maio, Nicola, Shaw, Liam P, Stoesser, Nicole, Peto, Tim E A, Crook, Derrick W, Walker, A Sarah
Format: Artigo
Idioma:Inglês
Publicat: Oxford University Press 2020
Matèries:
Research
Accés en línia:https://ncbi.nlm.nih.gov/pmc/articles/PMC7002876/
https://ncbi.nlm.nih.gov/pubmed/32025702
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/gigascience/giaa007
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