Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines

BACKGROUND: Accurately identifying single-nucleotide polymorphisms (SNPs) from bacterial sequencing data is an essential requirement for using genomics to track transmission and predict important phenotypes such as antimicrobial resistance. However, most previous performance evaluations of SNP calli...

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Detalhes bibliográficos
Publicado no:Gigascience
Main Authors: Bush, Stephen J, Foster, Dona, Eyre, David W, Clark, Emily L, De Maio, Nicola, Shaw, Liam P, Stoesser, Nicole, Peto, Tim E A, Crook, Derrick W, Walker, A Sarah
Formato: Artigo
Idioma:Inglês
Publicado em: Oxford University Press 2020
Assuntos:
Research
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC7002876/
https://ncbi.nlm.nih.gov/pubmed/32025702
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/gigascience/giaa007
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