Pairwise alignment of nucleotide sequences using maximal exact matches

BACKGROUND: Pairwise alignment of short DNA sequences with affine-gap scoring is a common processing step performed in a range of bioinformatics analyses. Dynamic programming (i.e. Smith-Waterman algorithm) is widely used for this purpose. Despite using data level parallelisation, pairwise alignment...

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Detaylı Bibliyografya
Yayımlandı:BMC Bioinformatics
Asıl Yazarlar: Bayat, Arash, Gaëta, Bruno, Ignjatovic, Aleksandar, Parameswaran, Sri
Materyal Türü: Artigo
Dil:Inglês
Baskı/Yayın Bilgisi: BioMed Central 2019
Konular:
Methodology Article
Online Erişim:https://ncbi.nlm.nih.gov/pmc/articles/PMC6528274/
https://ncbi.nlm.nih.gov/pubmed/31113356
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s12859-019-2827-0
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