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Pairwise alignment of nucleotide sequences using maximal exact matches
Abstract Background Pairwise alignment of short DNA sequences with affine-gap scoring is a common processing step performed in a range of bioinformatics analyses. Dynamic programming (i.e. Smith-Waterman algorithm) is widely used for this purpose. Despite using data level parallelisation, pairwise a...
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| Main Authors: | , , , |
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| Formato: | Artigo |
| Idioma: | Inglês |
| Publicado em: |
BMC
2019-05-01
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| Colecção: | BMC Bioinformatics |
| Assuntos: | |
| Acesso em linha: | http://link.springer.com/article/10.1186/s12859-019-2827-0 |
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