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Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets using protocol-specific bias modeling

BACKGROUND: DNase-seq and ATAC-seq are broadly used methods to assay open chromatin regions genome-wide. The single nucleotide resolution of DNase-seq has been further exploited to infer transcription factor binding sites (TFBSs) in regulatory regions through footprinting. Recent studies have demons...

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Publicat a:Genome Biol
Autors principals: Karabacak Calviello, Aslıhan, Hirsekorn, Antje, Wurmus, Ricardo, Yusuf, Dilmurat, Ohler, Uwe
Format: Artigo
Idioma:Inglês
Publicat: BioMed Central 2019
Matèries:
Accés en línia:https://ncbi.nlm.nih.gov/pmc/articles/PMC6385462/
https://ncbi.nlm.nih.gov/pubmed/30791920
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s13059-019-1654-y
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