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MegaGTA: a sensitive and accurate metagenomic gene-targeted assembler using iterative de Bruijn graphs

BACKGROUND: The recent release of the gene-targeted metagenomics assembler Xander has demonstrated that using the trained Hidden Markov Model (HMM) to guide the traversal of de Bruijn graph gives obvious advantage over other assembly methods. Xander, as a pilot study, indeed has a lot of room for im...

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Detalles Bibliográficos
Publicado en:BMC Bioinformatics
Main Authors: Li, Dinghua, Huang, Yukun, Leung, Chi-Ming, Luo, Ruibang, Ting, Hing-Fung, Lam, Tak-Wah
Formato: Artigo
Idioma:Inglês
Publicado: BioMed Central 2017
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Acceso en liña:https://ncbi.nlm.nih.gov/pmc/articles/PMC5657035/
https://ncbi.nlm.nih.gov/pubmed/29072142
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s12859-017-1825-3
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