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Gerbil: a fast and memory-efficient k-mer counter with GPU-support
BACKGROUND: A basic task in bioinformatics is the counting of k-mers in genome sequences. Existing k-mer counting tools are most often optimized for small k < 32 and suffer from excessive memory resource consumption or degrading performance for large k. However, given the technology trend towards...
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| Publié dans: | Algorithms Mol Biol |
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| Auteurs principaux: | , , |
| Format: | Artigo |
| Langue: | Inglês |
| Publié: |
BioMed Central
2017
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| Sujets: | |
| Accès en ligne: | https://ncbi.nlm.nih.gov/pmc/articles/PMC5374613/ https://ncbi.nlm.nih.gov/pubmed/28373894 https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/s13015-017-0097-9 |
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