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Fast randomized approximate string matching with succinct hash data structures

BACKGROUND: The high throughput of modern NGS sequencers coupled with the huge sizes of genomes currently analysed, poses always higher algorithmic challenges to align short reads quickly and accurately against a reference sequence. A crucial, additional, requirement is that the data structures used...

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Detalhes bibliográficos
Publicado no:BMC Bioinformatics
Main Authors: Policriti, Alberto, Prezza, Nicola
Formato: Artigo
Idioma:Inglês
Publicado em: BioMed Central 2015
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC4464037/
https://ncbi.nlm.nih.gov/pubmed/26051265
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/1471-2105-16-S9-S4
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