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Fast construction of FM-index for long sequence reads

Summary: We present a new method to incrementally construct the FM-index for both short and long sequence reads, up to the size of a genome. It is the first algorithm that can build the index while implicitly sorting the sequences in the reverse (complement) lexicographical order without a separate...

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Bibliografiska uppgifter
I publikationen:Bioinformatics
Huvudupphovsman: Li, Heng
Materialtyp: Artigo
Språk:Inglês
Publicerad: Oxford University Press 2014
Ämnen:
Länkar:https://ncbi.nlm.nih.gov/pmc/articles/PMC4221129/
https://ncbi.nlm.nih.gov/pubmed/25107872
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btu541
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