RECLU: a pipeline to discover reproducible transcriptional start sites and their alternative regulation using capped analysis of gene expression (CAGE)

BACKGROUND: Next generation sequencing based technologies are being extensively used to study transcriptomes. Among these, cap analysis of gene expression (CAGE) is specialized in detecting the most 5’ ends of RNA molecules. After mapping the sequenced reads back to a reference genome CAGE data high...

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Main Authors: Ohmiya, Hiroko, Vitezic, Morana, Frith, Martin C, Itoh, Masayoshi, Carninci, Piero, Forrest, Alistair RR, Hayashizaki, Yoshihide, Lassmann, Timo
Formato: Artigo
Idioma:Inglês
Publicado em: BioMed Central 2014
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Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC4029093/
https://ncbi.nlm.nih.gov/pubmed/24779366
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/1471-2164-15-269
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