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Compression of next-generation sequencing reads aided by highly efficient de novo assembly
We present Quip, a lossless compression algorithm for next-generation sequencing data in the FASTQ and SAM/BAM formats. In addition to implementing reference-based compression, we have developed, to our knowledge, the first assembly-based compressor, using a novel de novo assembly algorithm. A proba...
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| Main Authors: | , , , |
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| Formato: | Artigo |
| Idioma: | Inglês |
| Publicado em: |
Oxford University Press
2012
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| Assuntos: | |
| Acesso em linha: | https://ncbi.nlm.nih.gov/pmc/articles/PMC3526293/ https://ncbi.nlm.nih.gov/pubmed/22904078 https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/nar/gks754 |
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