SVDetect: a tool to identify genomic structural variations from paired-end and mate-pair sequencing data

Summary: We present SVDetect, a program designed to identify genomic structural variations from paired-end and mate-pair next-generation sequencing data produced by the Illumina GA and ABI SOLiD platforms. Applying both sliding-window and clustering strategies, we use anomalously mapped read pairs p...

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Bibliographic Details
Main Authors: Zeitouni, Bruno, Boeva, Valentina, Janoueix-Lerosey, Isabelle, Loeillet, Sophie, Legoix-né, Patricia, Nicolas, Alain, Delattre, Olivier, Barillot, Emmanuel
Format: Artigo
Language:Inglês
Published: Oxford University Press 2010
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Online Access:https://ncbi.nlm.nih.gov/pmc/articles/PMC2905550/
https://ncbi.nlm.nih.gov/pubmed/20639544
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/btq293
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