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Prediction of Potency of Protease Inhibitors Using Free Energy Simulations with Polarizable Quantum Mechanics-Based Ligand Charges and a Hybrid Water Model

Reliable and robust prediction of binding affinity for drug molecules continues to be a daunting challenge. We have simulated the binding interactions and free energy of binding of nine protease inhibitors (PIs) with wild-type and various mutant proteases by performing GBSA simulations, in which eac...

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Sonraí Bibleagrafaíochta
Main Authors: Das, Debananda, Koh, Yasuhiro, Tojo, Yasushi, Ghosh, Arun K., Mitsuya, Hiroaki
Formáid: Artigo
Teanga:Inglês
Foilsithe: 2009
Ábhair:
Rochtain Ar Líne:https://ncbi.nlm.nih.gov/pmc/articles/PMC2860540/
https://ncbi.nlm.nih.gov/pubmed/19928916
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1021/ci900320p
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