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HIV-1 protease flaps spontaneously close to the correct structure in simulations following manual placement of an inhibitor into the open state

[Image: see text] We report unrestrained, all-atom molecular dynamics simulations of HIV-1 protease (HIV-PR) with a continuum solvent model that reproducibly sample closing of the active site flaps following manual placement of a cyclic urea inhibitor into the substrate binding site of the open prot...

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Main Authors: Hornak, Viktor, Okur, Asim, Rizzo, Robert C., Simmerling, Carlos
Formato: Artigo
Idioma:Inglês
Publicado: 2006
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Acceso en liña:https://ncbi.nlm.nih.gov/pmc/articles/PMC2555982/
https://ncbi.nlm.nih.gov/pubmed/16506755
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1021/ja058211x
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