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HIV-1 protease flaps spontaneously open and reclose in molecular dynamics simulations

We report unrestrained, all-atom molecular dynamics simulations of HIV-1 protease that sample large conformational changes of the active site flaps. In particular, the unliganded protease undergoes multiple conversions between the “closed” and “semiopen” forms observed in crystal structures of inhib...

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Détails bibliographiques
Auteurs principaux: Hornak, Viktor, Okur, Asim, Rizzo, Robert C., Simmerling, Carlos
Format: Artigo
Langue:Inglês
Publié: National Academy of Sciences 2006
Sujets:
Accès en ligne:https://ncbi.nlm.nih.gov/pmc/articles/PMC1347991/
https://ncbi.nlm.nih.gov/pubmed/16418268
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1073/pnas.0508452103
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