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Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

We have developed a new set of algorithms, collectively called “Velvet,” to manipulate de Bruijn graphs for genomic sequence assembly. A de Bruijn graph is a compact representation based on short words (k-mers) that is ideal for high coverage, very short read (25–50 bp) data sets. Applying Velvet to...

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Autori principali: Zerbino, Daniel R., Birney, Ewan
Natura: Artigo
Lingua:Inglês
Pubblicazione: Cold Spring Harbor Laboratory Press 2008
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Accesso online:https://ncbi.nlm.nih.gov/pmc/articles/PMC2336801/
https://ncbi.nlm.nih.gov/pubmed/18349386
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1101/gr.074492.107
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