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Parallelized short read assembly of large genomes using de Bruijn graphs

BACKGROUND: Next-generation sequencing technologies have given rise to the explosive increase in DNA sequencing throughput, and have promoted the recent development of de novo short read assemblers. However, existing assemblers require high execution times and a large amount of compute resources to...

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Détails bibliographiques
Auteurs principaux: Liu, Yongchao, Schmidt, Bertil, Maskell, Douglas L
Format: Artigo
Langue:Inglês
Publié: BioMed Central 2011
Sujets:
Accès en ligne:https://ncbi.nlm.nih.gov/pmc/articles/PMC3167803/
https://ncbi.nlm.nih.gov/pubmed/21867511
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/1471-2105-12-354
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