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DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI

BACKGROUND: Next-generation sequencing technologies have led to the high-throughput production of sequence data (reads) at low cost. However, these reads are significantly shorter and more error-prone than conventional Sanger shotgun reads. This poses a challenge for the de novo assembly in terms of...

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Detalhes bibliográficos
Main Authors: Liu, Yongchao, Schmidt, Bertil, Maskell, Douglas L
Formato: Artigo
Idioma:Inglês
Publicado em: BioMed Central 2011
Assuntos:
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC3072957/
https://ncbi.nlm.nih.gov/pubmed/21447171
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1186/1471-2105-12-85
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