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Molecular dynamics study displays near in-line attack conformations in the hammerhead ribozyme self-cleavage reaction

We have performed molecular dynamics (MD) calculations by using one of the recently solved crystal structures of a hammerhead ribozyme. By rotating the α, β, γ, δ, ɛ, and ζ torsion angles of the phosphate linkage of residue 17, the nucleobase at the cleavage site was slightly rotated out of the acti...

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Foilsithe in:Proc Natl Acad Sci U S A
Príomhchruthaitheoirí: Torres, Rhonda A., Bruice, Thomas C.
Formáid: Artigo
Teanga:Inglês
Foilsithe / Cruthaithe: National Academy of Sciences 1998
Ábhair:
Rochtain ar líne:https://ncbi.nlm.nih.govhttps://pmc.ncbi.nlm.nih.gov/articles/PMC21598/
https://ncbi.nlm.nih.govhttps://pubmed.ncbi.nlm.nih.gov/9736692/
https://ncbi.nlm.nih.govhttps://doi.org/10.1073/pnas.95.19.11077
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