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Indexing Strategies for Rapid Searches of Short Words in Genome Sequences

Searching for matches between large collections of short (14–30 nucleotides) words and sequence databases comprising full genomes or transcriptomes is a common task in biological sequence analysis. We investigated the performance of simple indexing strategies for handling such tasks and developed tw...

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Bibliografske podrobnosti
Main Authors: Iseli, Christian, Ambrosini, Giovanna, Bucher, Philipp, Jongeneel, C. Victor
Format: Artigo
Jezik:Inglês
Izdano: Public Library of Science 2007
Teme:
Online dostop:https://ncbi.nlm.nih.gov/pmc/articles/PMC1894650/
https://ncbi.nlm.nih.gov/pubmed/17593978
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1371/journal.pone.0000579
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