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Indexing Strategies for Rapid Searches of Short Words in Genome Sequences

Searching for matches between large collections of short (14–30 nucleotides) words and sequence databases comprising full genomes or transcriptomes is a common task in biological sequence analysis. We investigated the performance of simple indexing strategies for handling such tasks and developed tw...

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Bibliografski detalji
Glavni autori: Iseli, Christian, Ambrosini, Giovanna, Bucher, Philipp, Jongeneel, C. Victor
Format: Artigo
Jezik:Inglês
Izdano: Public Library of Science 2007
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Online pristup:https://ncbi.nlm.nih.gov/pmc/articles/PMC1894650/
https://ncbi.nlm.nih.gov/pubmed/17593978
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1371/journal.pone.0000579
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